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open2c / open2c_examples

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io #6

Open golobor opened 3 years ago

golobor commented 3 years ago

I think it might be a good idea to have a notebook on I/O. I think it could be very useful for beginners. There, we could also (a) introduce preferred approaches to I/O (i.e. bioframe machinery), (b) advertise other packages, (c) introduce fetches, etc.

gfudenberg commented 2 years ago

were you thinking this would be built into the cooltools docs, or not, @golobor ? if not, maybe we'd need to separate the open2c_examples ipynbs into ./io/, ./cooltools/, so the relevant notebooks could be built into the relevant docs

gfudenberg commented 2 years ago

would https://cooltools.readthedocs.io/en/latest/notebooks/pileup_CTCF.html#Download-data be a good section to start it?