open2c / pairtools

Extract 3D contacts (.pairs) from sequencing alignments
MIT License
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NaNs in the feature table for snipping #100

Closed agalitsyna closed 2 years ago

agalitsyna commented 3 years ago

If there are NaNs in the feature table for snipping, the snippers will work only if lo and hi are provided as additional columns (start and end genomic bins instead of nucleotide positions). Probably a good idea to solve this is to create snipper class with a method for "empty snip".