Open wbszhu opened 3 years ago
Hi @Anton， I am using pairtools to parse the hichip data, choosing to keep only the type UU. But I find that it contains a certain number of pairs that are very close (<100bp). I wanna know whether this part should be marked as self-ligate.
A00545: 76:HW7 7KDSXY:1 :2345:17689:17065 chr1 2607 chr1 2616 A00543:178 : HVFNHDSXY:1 :1637 : 31684: 34100 chr1 4421 chr1 4476 A00543 :178 :HVFNHDSXY :1: 1649: 20039: 30843 chr1 28651 chr1 28718 A00543: 178 :HVF NHDSXY :1 : 1365: 30942:33692 chr1 30812 chr1 30820 A00545: 76:HW7 7KDSXY:1 :1673: 9001: 29794 chr1 40995 chr1 41030 A00543 :178 : HVFNHDSXY :1:1408:5647 :21574 chr1 41637 chr1 41645
luzhang.
Hi @Anton， I am using pairtools to parse the hichip data, choosing to keep only the type UU. But I find that it contains a certain number of pairs that are very close (<100bp). I wanna know whether this part should be marked as self-ligate.
UU pairs
A00545: 76:HW7 7KDSXY:1 :2345:17689:17065 chr1 2607 chr1 2616 A00543:178 : HVFNHDSXY:1 :1637 : 31684: 34100 chr1 4421 chr1 4476 A00543 :178 :HVFNHDSXY :1: 1649: 20039: 30843 chr1 28651 chr1 28718 A00543: 178 :HVF NHDSXY :1 : 1365: 30942:33692 chr1 30812 chr1 30820 A00545: 76:HW7 7KDSXY:1 :1673: 9001: 29794 chr1 40995 chr1 41030 A00543 :178 : HVFNHDSXY :1:1408:5647 :21574 chr1 41637 chr1 41645
luzhang.