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open2c / pairtools

Extract 3D contacts (.pairs) from sequencing alignments
MIT License
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stats: calculate the divergence point and corresponding read fractions #222

Closed golobor closed 7 months ago

golobor commented 8 months ago
golobor commented 8 months ago

@Phlya @agalitsyna - do you want to take a quick look? the names of statistics are a bit messy, but otherwise should be ok

golobor commented 8 months ago

now with tests passing. Stats are a mess and a PITA. ;)

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golobor commented 8 months ago

@agalitsyna @Phlya - I do not plan any further changes, could you review it please?

golobor commented 7 months ago

@Phlya @agalitsyna ping :)

Phlya commented 7 months ago

Looks good to me! I am assuming you have run it and it actually works :)

Phlya commented 7 months ago

Perhaps we could have a test for the convergence point...

golobor commented 7 months ago

@Phlya, I added the test - LLMs FTW!