golobor
commented
2 months ago Hi Bastiaan, Thank you for the report! Is there any chance you could submit this fix as a PR? :)
On Thu, May 9, 2024, 19:50 DekkerBastiaan @.***> wrote:
Hi,
While running scaling by pairs I ran into the following error.
File ~/miniconda3/envs/tools/lib/python3.10/site-packages/pairtools/lib/scaling.py:54, in (.0) def assign_regs(chroms, pos, regs): gb_regs = regs.sort_values(["chrom", "start", "end"]).groupby(["chrom"]) regs_dict = { ---> chrom.encode(): regs_per_chrom[["start", "end"]] .values.flatten() .astype(np.int64) for chrom, regs_per_chrom in gb_regs } return assign_regs_c(np.asarray(chroms).astype("bytes"), np.asarray(pos), regs_dict) AttributeError: 'tuple' object has no attribute 'encode'
Perhaps it is due to how my regions dataframe was constructed, but the following change at the groupby function did fix the issue.
regs.sort_values(["chrom", "start", "end"]).groupby(["chrom"])
regs.sort_values(["chrom", "start", "end"]).groupby("chrom")
Let me know if this this is due to my regions formatting or if others will have the same problem.
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Hi,
While running scaling by pairs I ran into the following error.
Perhaps it is due to how my regions dataframe was constructed, but the following change at the groupby function did fix the issue.
Let me know if this this is due to my regions formatting or if others will have the same problem.