open2c / quaich

snakemake pipeline for Hi-C post-processing
MIT License
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Issue with recent versions of matplotlib #15

Open JonHum opened 2 months ago

JonHum commented 2 months ago

Hi, I am trying to run the test data, and encountered an error at this step: ERROR:snakemake.logging:Error in rule plot_pileups_compare_samples: jobid: 80 The associated log states ImportError: cannot import name 'register_cmap' from 'matplotlib.cm' (/quaich/.snakemake/conda/40473205122511e8dc65afef80129cd2_/lib/python3.12/site-packages/matplotlib/cm.py) which I believe is related to this this earlier issue with cooltools and matplotlib updates.

Any way to go around this? Thanks a lot in advance!