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openMetadataInitiative / openMINDS_controlledTerms

Metadata model for the consistent registration of well-defined terms as well as a corresponding library of terminologies (including links to ontological terms where applicable).
MIT License
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new technique requests #47

Closed lzehl closed 3 years ago

lzehl commented 3 years ago

@tgbugs : we would like to add the following instances. Would you agree? (some of them might only not exist in our list, but you have them already)

"NEW" TECHNIQUES SUGGESTIONS:

  1. calcium imaging
  2. fiber photometry
  3. pupillometry
  4. electrooculography
  5. video-oculography
  6. eye-attached tracking
  7. ultrasound imaging
  8. virus transfection OR virus-mediated transfection
  9. neuronal tracing
  10. retrograde tracing
  11. voltammetry
  12. cryopreservation
  13. cryofixation
  14. manual sectioning (if tissue was cutted by hand with a knife to smaller pieces)
UlrikeS91 commented 3 years ago

Note: 4. electrooculography already exists as a controlledTerm/technique

Continuation of @lzehl's list:

  1. 3D computer graphic modeling
  2. 3D scanning
  3. beta-galactosidase staining
  4. connectivity based parcellation technique
  5. drifting grating visual stimulation
  6. electromyography
  7. figure-ground visual stimulation
  8. headpost implantation surgery
  9. high-speed video recording
  10. immunoprecipitation
  11. implant surgery
  12. injection
  13. intracranial electroencephalography
  14. mass spectrometry
  15. morphometry
  16. multi-compartement modeling
  17. natural image visual stimulation
  18. natural sound stimulation
  19. non-rigid motion correction
  20. perfusion fixation technique
  21. perturbational complexity index analysis
  22. photon stimulation technique
  23. pressure (micro) injection
  24. rule-based modeling
  25. scattered light imaging
  26. seed-based correlation analysis
  27. sonography
  28. static grating visual stimulation
  29. stimulation
  30. structural covariance analysis
  31. tetrode extracellular electrophysiology
  32. video tracking
  33. voxel-based morphometry

Some additional ones that may be up for discussion:

  1. (ligand) binding affinity measurement
  2. communication profiling
  3. dye filling
  4. light extinction measurement
  5. nonlinear image registration

@tgbugs Any comments? ;)

tgbugs commented 3 years ago

A bunch of these are already in the ontology, will need to do a more thorough check (this format is not easy to review).

UlrikeS91 commented 3 years ago

I'll close this issue for now. We have added (I think) all of them for now (https://github.com/HumanBrainProject/openMINDS_controlledTerms/pull/48) but can be changed later on if necessary.