parcellations to register - Githubissues

openMetadataInitiative / openMINDS_instances

Well defined metadata instances for selected schemas of the openMINDS metadata models.

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parcellations to register #125

Open lzehl opened 1 year ago

lzehl commented 1 year ago

[ ] 'MarsAtlas'
[ ] 'IntrAnat-MarsAtlas'
[ ] 'AAL2'
[ ] 'AAL3'
[ ] 'AICHA'
[ ] 'Brodmann (monkey)'
[ ] 'Destrieux'
[ ] 'DKT'
[ ] 'Hammers'
[ ] 'HCP-MMP1'
[ ] 'Lausanne2008-125'
[ ] 'Lausanne2008-250'
[ ] 'Lausanne2008-33'
[ ] 'Lausanne2008-60'
[ ] 'Lausanne2008-500'

HAVE (at least in prelim version independent desc, + in some cases prelim version desc):

'Julich-Brain'
'Waxholm SD'
'Aseg'
'DK atlas'
'AAL1'
'AMBA' (Allen Mouse)
'Brodmann (human)'
'DWMA' (deep white matter bundle atlas)

HAVE in Interlex:

HCP-MMP1
DK
subset Brodmann
Waxholm SD
check FSL
check freesurfer

tgbugs commented 1 year ago

See also for reference: https://github.com/SciCrunch/NIF-Ontology/issues/45 https://github.com/SciCrunch/NIF-Ontology/issues/49 https://github.com/tgbugs/pyontutils/tree/master/nifstd/nifstd_tools/parcellation https://github.com/SciCrunch/NIF-Ontology/blob/parcellation/ttl/generated/parcellation-artifacts.ttl

lzehl commented 1 year ago

@SairaJHu based on our meeting I wanted to pin you to this issue