Includes of a conda environment are not considered by SCons.
scons: Reading SConscript files ... scons: done reading SConscript files. scons: Building targets ... Install file: "build-scons/src/cpp/distribution.h" as "build-scons/include/stat_tool/distribution.h" Install file: "build-scons/src/cpp/compound.h" as "build-scons/include/stat_tool/compound.h" Install file: "build-scons/src/cpp/stat_tools.h" as "build-scons/include/stat_tool/stat_tools.h" Install file: "build-scons/src/cpp/chain_reestimation.h" as "build-scons/include/stat_tool/chain_reestimation.h" Install file: "build-scons/src/cpp/plotable.h" as "build-scons/include/stat_tool/plotable.h" Install file: "build-scons/src/cpp/vectors.h" as "build-scons/include/stat_tool/vectors.h" Install file: "build-scons/src/cpp/markovian.h" as "build-scons/include/stat_tool/markovian.h" Install file: "build-scons/src/cpp/regression.h" as "build-scons/include/stat_tool/regression.h" Install file: "build-scons/src/cpp/stat_label.h" as "build-scons/include/stat_tool/stat_label.h" Install file: "build-scons/src/cpp/convolution.h" as "build-scons/include/stat_tool/convolution.h" Install file: "build-scons/src/cpp/mixture.h" as "build-scons/include/stat_tool/mixture.h" Install file: "build-scons/src/cpp/reestimation.h" as "build-scons/include/stat_tool/reestimation.h" Install file: "build-scons/src/cpp/distance_matrix.h" as "build-scons/include/stat_tool/distance_matrix.h" Install file: "build-scons/src/cpp/discrete_mixture.h" as "build-scons/include/stat_tool/discrete_mixture.h" Install file: "build-scons/src/cpp/curves.h" as "build-scons/include/stat_tool/curves.h" Install file: "build-scons/src/cpp/continuous_parametric_estimation.hpp" as "build-scons/include/stat_tool/continuous_parametric_estimation.hpp" Install file: "build-scons/src/cpp/plotable.hpp" as "build-scons/include/stat_tool/plotable.hpp" Install file: "build-scons/src/cpp/quantile_computation.hpp" as "build-scons/include/stat_tool/quantile_computation.hpp" Install file: "build-scons/src/cpp/distribution_reestimation.hpp" as "build-scons/include/stat_tool/distribution_reestimation.hpp" Install file: "build-scons/src/cpp/chain_reestimation.hpp" as "build-scons/include/stat_tool/chain_reestimation.hpp" Install file: "build-scons/src/cpp/reestimation.hpp" as "build-scons/include/stat_tool/reestimation.hpp" g++ -o build-scons/src/cpp/compound_algorithms.os -c -DNDEBUG -O2 -x c++ -std=c++0x -DNDEBUG -O2 -fPIC -ftemplate-depth-100 -DBOOST_PYTHON_DYNAMIC_LIB -DMESSAGE -Ibuild-scons/include -I/usr/include -I/home/pfernique/.miniconda/envs/vplants/include/python2.7 build-scons/src/cpp/compound_algorithms.cpp In file included from build-scons/src/cpp/stat_tools.h:1030:0, from build-scons/src/cpp/compound.h:43, from build-scons/src/cpp/compound_algorithms.cpp:41: build-scons/src/cpp/reestimation.hpp:46:52: fatal error: boost/math/special_functions/digamma.hpp: No such file or directory compilation terminated. scons: *** [build-scons/src/cpp/compound_algorithms.os] Error 1 scons: building terminated because of errors.
Includes of a conda environment are not considered by SCons.
scons: Reading SConscript files ... scons: done reading SConscript files. scons: Building targets ... Install file: "build-scons/src/cpp/distribution.h" as "build-scons/include/stat_tool/distribution.h" Install file: "build-scons/src/cpp/compound.h" as "build-scons/include/stat_tool/compound.h" Install file: "build-scons/src/cpp/stat_tools.h" as "build-scons/include/stat_tool/stat_tools.h" Install file: "build-scons/src/cpp/chain_reestimation.h" as "build-scons/include/stat_tool/chain_reestimation.h" Install file: "build-scons/src/cpp/plotable.h" as "build-scons/include/stat_tool/plotable.h" Install file: "build-scons/src/cpp/vectors.h" as "build-scons/include/stat_tool/vectors.h" Install file: "build-scons/src/cpp/markovian.h" as "build-scons/include/stat_tool/markovian.h" Install file: "build-scons/src/cpp/regression.h" as "build-scons/include/stat_tool/regression.h" Install file: "build-scons/src/cpp/stat_label.h" as "build-scons/include/stat_tool/stat_label.h" Install file: "build-scons/src/cpp/convolution.h" as "build-scons/include/stat_tool/convolution.h" Install file: "build-scons/src/cpp/mixture.h" as "build-scons/include/stat_tool/mixture.h" Install file: "build-scons/src/cpp/reestimation.h" as "build-scons/include/stat_tool/reestimation.h" Install file: "build-scons/src/cpp/distance_matrix.h" as "build-scons/include/stat_tool/distance_matrix.h" Install file: "build-scons/src/cpp/discrete_mixture.h" as "build-scons/include/stat_tool/discrete_mixture.h" Install file: "build-scons/src/cpp/curves.h" as "build-scons/include/stat_tool/curves.h" Install file: "build-scons/src/cpp/continuous_parametric_estimation.hpp" as "build-scons/include/stat_tool/continuous_parametric_estimation.hpp" Install file: "build-scons/src/cpp/plotable.hpp" as "build-scons/include/stat_tool/plotable.hpp" Install file: "build-scons/src/cpp/quantile_computation.hpp" as "build-scons/include/stat_tool/quantile_computation.hpp" Install file: "build-scons/src/cpp/distribution_reestimation.hpp" as "build-scons/include/stat_tool/distribution_reestimation.hpp" Install file: "build-scons/src/cpp/chain_reestimation.hpp" as "build-scons/include/stat_tool/chain_reestimation.hpp" Install file: "build-scons/src/cpp/reestimation.hpp" as "build-scons/include/stat_tool/reestimation.hpp" g++ -o build-scons/src/cpp/compound_algorithms.os -c -DNDEBUG -O2 -x c++ -std=c++0x -DNDEBUG -O2 -fPIC -ftemplate-depth-100 -DBOOST_PYTHON_DYNAMIC_LIB -DMESSAGE -Ibuild-scons/include -I/usr/include -I/home/pfernique/.miniconda/envs/vplants/include/python2.7 build-scons/src/cpp/compound_algorithms.cpp In file included from build-scons/src/cpp/stat_tools.h:1030:0, from build-scons/src/cpp/compound.h:43, from build-scons/src/cpp/compound_algorithms.cpp:41: build-scons/src/cpp/reestimation.hpp:46:52: fatal error: boost/math/special_functions/digamma.hpp: No such file or directory compilation terminated. scons: *** [build-scons/src/cpp/compound_algorithms.os] Error 1 scons: building terminated because of errors.