Interfacing sequence_analysis with Python

openalea / StructureAnalysis

Plant structure analysis

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Interfacing sequence_analysis with Python #56

Open thomasarsouze opened 2 months ago

thomasarsouze commented 2 months ago

Currently, wrappers compilation is commented in stat_tool but works in sequence_analysis. Uncommenting the lines leads to a compilation issue. This suggests that C++ code diverges from associated wrappers implementation.

This possibilities are the following:

debug the wrapping in new_python_api branch, sticking to python2.7
directly creating a python3 version / interface either boost / autowig / pybind11

pradal commented 1 week ago

No. The wrappers have not been built and the C++ API have evolved... In both old and new wrappers, it seems that the API has changed and either we need to regenrate the wrappers, or at least update to new API

pradal commented 1 week ago

I build the old wrappers and update slightly the code on my computer (Mac). Push it in the branch