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openalea / phenomenal

Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping
https://phenomenal.readthedocs.io
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ImportError: DLL load failed while importing vtkIONetCDF #37

Open SamBum92 opened 1 year ago

SamBum92 commented 1 year ago

Device Name DESKTOP-RU12A4K Processor Intel(R) Xeon(R) CPU E5-2670 v3 @ 2.30GHz Installed RAM 64.0 GB Device ID F0AF90DF-D0F3-4473-B358-B20902DF1C92 Product ID 00330-80000-00000-AA901 System type 64-bit operating system, x64-based processor Pen and touch No pen or touch input available for this screen

Windows 10 Pro Edition Version 22H2 Installation date: 10/06/2021 Operating System Build 19045.3570 Windows Feature Experience Pack 1000.19052.1000.0

Install dependency with conda

conda create -n phm -c conda-forge python=3.8 conda activate phm conda install -c conda-forge -c openalea cython numpy numba scipy scikit-image scikit-learn networkx=2.3 opencv matplotlib vtk pytest

Load phenomenal and install

git clone https://github.com/openalea/phenomenal.git cd phenomenal python setup.py develop

(Optional) Test your installation

cd test pytest

================================================================================================================== ERRORS ==================================================================================================================
________________________________________________________________________________________ ERROR collecting test/test_calibration/test_calibration.py ________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_calibration\test_calibration.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_calibration\test_calibration.py:18: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
__________________________________________________________________________________ ERROR collecting test/test_calibration/test_calibration_chess_frame.py __________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_calibration\test_calibration_chess_frame.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_calibration\test_calibration_chess_frame.py:19: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
__________________________________________________________________________________ ERROR collecting test/test_calibration/test_calibration_projection.py ___________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_calibration\test_calibration_projection.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_calibration\test_calibration_projection.py:17: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
________________________________________________________________________________________ ERROR collecting test/test_calibration/test_chessboard.py _________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_calibration\test_chessboard.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_calibration\test_chessboard.py:17: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
____________________________________________________________________________________________ ERROR collecting test/test_mesh/test_algorithms.py ____________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_mesh\test_algorithms.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_mesh\test_algorithms.py:16: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
__________________________________________________________________________ ERROR collecting test/test_multi_view_reconstruction/test_multi_view_reconstruction.py __________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_multi_view_reconstruction\test_multi_view_reconstruction.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_multi_view_reconstruction\test_multi_view_reconstruction.py:17: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
____________________________________________________________________________________________ ERROR collecting test/test_object/test_Image3D.py _____________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_object\test_Image3D.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_object\test_Image3D.py:14: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
___________________________________________________________________________________________ ERROR collecting test/test_object/test_VoxelGrid.py ____________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_object\test_VoxelGrid.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_object\test_VoxelGrid.py:16: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
__________________________________________________________________________________________ ERROR collecting test/test_object/test_sementation.py ___________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_object\test_sementation.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_object\test_sementation.py:19: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Impossibile trovare la procedura specificata.
_________________________________________________________________________________________ ERROR collecting test/test_object/test_voxelSkeleton.py __________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_object\test_voxelSkeleton.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_object\test_voxelSkeleton.py:16: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
_______________________________________________________________________________________ ERROR collecting test/test_segmentation/test_create_graph.py _______________________________________________________________________________________
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\runner.py:341: in from_call
    result: Optional[TResult] = func()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\runner.py:372: in <lambda>
    call = CallInfo.from_call(lambda: list(collector.collect()), "collect")
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:531: in collect
    self._inject_setup_module_fixture()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:545: in _inject_setup_module_fixture
    self.obj, ("setUpModule", "setup_module")
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:310: in obj
    self._obj = obj = self._getobj()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:528: in _getobj
    return self._importtestmodule()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:617: in _importtestmodule
    mod = import_path(self.path, mode=importmode, root=self.config.rootpath)
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\pathlib.py:567: in import_path
    importlib.import_module(module_name)
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1014: in _gcd_import
    ???
<frozen importlib._bootstrap>:991: in _find_and_load
    ???
<frozen importlib._bootstrap>:975: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:671: in _load_unlocked
    ???
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\assertion\rewrite.py:186: in exec_module
    exec(co, module.__dict__)
test_segmentation\test_create_graph.py:14: in <module>
    import networkx
..\..\anaconda3\envs\phm\lib\site-packages\networkx\__init__.py:117: in <module>
    import networkx.readwrite
..\..\anaconda3\envs\phm\lib\site-packages\networkx\readwrite\__init__.py:15: in <module>
    from networkx.readwrite.graphml import *
..\..\anaconda3\envs\phm\lib\site-packages\networkx\readwrite\graphml.py:314: in <module>
    class GraphML(object):
..\..\anaconda3\envs\phm\lib\site-packages\networkx\readwrite\graphml.py:346: in GraphML
    (np.int, "int"), (np.int8, "int"),
..\..\anaconda3\envs\phm\lib\site-packages\numpy\__init__.py:305: in __getattr__
    raise AttributeError(__former_attrs__[attr])
E   AttributeError: module 'numpy' has no attribute 'int'.
E   `np.int` was a deprecated alias for the builtin `int`. To avoid this error in existing code, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
E   The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E       https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
______________________________________________________________________________________ ERROR collecting test/test_segmentation/test_graph_connect.py _______________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_segmentation\test_graph_connect.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_segmentation\test_graph_connect.py:14: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
__________________________________________________________________________________________ ERROR collecting test/test_segmentation/test_maize.py ___________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_segmentation\test_maize.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_segmentation\test_maize.py:16: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
_________________________________________________________________________________ ERROR collecting test/test_segmentation/test_routines_remove_internal.py _________________________________________________________________________________
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\runner.py:341: in from_call
    result: Optional[TResult] = func()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\runner.py:372: in <lambda>
    call = CallInfo.from_call(lambda: list(collector.collect()), "collect")
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:531: in collect
    self._inject_setup_module_fixture()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:545: in _inject_setup_module_fixture
    self.obj, ("setUpModule", "setup_module")
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:310: in obj
    self._obj = obj = self._getobj()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:528: in _getobj
    return self._importtestmodule()
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\python.py:617: in _importtestmodule
    mod = import_path(self.path, mode=importmode, root=self.config.rootpath)
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\pathlib.py:567: in import_path
    importlib.import_module(module_name)
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
<frozen importlib._bootstrap>:1014: in _gcd_import
    ???
<frozen importlib._bootstrap>:991: in _find_and_load
    ???
<frozen importlib._bootstrap>:975: in _find_and_load_unlocked
    ???
<frozen importlib._bootstrap>:671: in _load_unlocked
    ???
..\..\anaconda3\envs\phm\lib\site-packages\_pytest\assertion\rewrite.py:186: in exec_module
    exec(co, module.__dict__)
test_segmentation\test_routines_remove_internal.py:17: in <module>
    import openalea.phenomenal.segmentation as phm_seg
..\src\openalea\phenomenal\segmentation\__init__.py:39: in <module>
    from .plane_interception import *
..\src\openalea\phenomenal\segmentation\plane_interception.py:14: in <module>
    import networkx
..\..\anaconda3\envs\phm\lib\site-packages\networkx\__init__.py:117: in <module>
    import networkx.readwrite
..\..\anaconda3\envs\phm\lib\site-packages\networkx\readwrite\__init__.py:15: in <module>
    from networkx.readwrite.graphml import *
..\..\anaconda3\envs\phm\lib\site-packages\networkx\readwrite\graphml.py:314: in <module>
    class GraphML(object):
..\..\anaconda3\envs\phm\lib\site-packages\networkx\readwrite\graphml.py:346: in GraphML
    (np.int, "int"), (np.int8, "int"),
..\..\anaconda3\envs\phm\lib\site-packages\numpy\__init__.py:305: in __getattr__
    raise AttributeError(__former_attrs__[attr])
E   AttributeError: module 'numpy' has no attribute 'int'.
E   `np.int` was a deprecated alias for the builtin `int`. To avoid this error in existing code, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
E   The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
E       https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
_________________________________________________________________________________________ ERROR collecting test/test_segmentation/test_skeleton.py _________________________________________________________________________________________
ImportError while importing test module '...\phenomenal\test\test_segmentation\test_skeleton.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
test_segmentation\test_skeleton.py:16: in <module>
    import openalea.phenomenal.data as phm_data
..\src\openalea\phenomenal\data\__init__.py:43: in <module>
    from .data import *
..\src\openalea\phenomenal\data\data.py:22: in <module>
    from ..mesh import read_ply_to_vertices_faces
..\src\openalea\phenomenal\mesh\__init__.py:61: in <module>
    from .algorithms import *
..\src\openalea\phenomenal\mesh\algorithms.py:12: in <module>
    import vtk
..\..\anaconda3\envs\phm\lib\site-packages\vtk.py:30: in <module>
    all_m = importlib.import_module('vtkmodules.all')
..\..\anaconda3\envs\phm\lib\importlib\__init__.py:127: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
..\..\anaconda3\envs\phm\lib\site-packages\vtkmodules\all.py:51: in <module>
    from .vtkIONetCDF import *
E   ImportError: DLL load failed while importing vtkIONetCDF: Unable to find the specified procedure.
============================================================================================================= warnings summary =============================================================================================================
..\src\openalea\__init__.py:14
  ...\phenomenal\src\openalea\__init__.py:14: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    import pkg_resources

..\..\anaconda3\envs\phm\lib\site-packages\pkg_resources\__init__.py:2871
 ...\anaconda3\envs\phm\lib\site-packages\pkg_resources\__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    declare_namespace(pkg)

..\src\openalea\__init__.py:15
  ...\phenomenal\src\openalea\__init__.py:15: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('openalea')`.
  Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
    pkg_resources.declare_namespace(__name__)

..\..\anaconda3\envs\phm\lib\site-packages\skimage\util\dtype.py:27
  ...\anaconda3\envs\phm\lib\site-packages\skimage\util\dtype.py:27: DeprecationWarning: `np.bool8` is a deprecated alias for `np.bool_`.  (Deprecated NumPy 1.24)
    np.bool8: (False, True),

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========================================================================================================= short test summary info ==========================================================================================================
ERROR test_calibration\test_calibration.py
ERROR test_calibration\test_calibration_chess_frame.py
ERROR test_calibration\test_calibration_projection.py
ERROR test_calibration\test_chessboard.py
ERROR test_mesh\test_algorithms.py
ERROR test_multi_view_reconstruction\test_multi_view_reconstruction.py
ERROR test_object\test_Image3D.py
ERROR test_object\test_VoxelGrid.py
ERROR test_object\test_sementation.py
ERROR test_object\test_voxelSkeleton.py
ERROR test_segmentation\test_create_graph.py - AttributeError: module 'numpy' has no attribute 'int'.
ERROR test_segmentation\test_graph_connect.py
ERROR test_segmentation\test_maize.py
ERROR test_segmentation\test_routines_remove_internal.py - AttributeError: module 'numpy' has no attribute 'int'.
ERROR test_segmentation\test_skeleton.py
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 15 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
===================================================================================================== 4 warnings, 15 errors in 13.09s ======================================================================================================