mnazarov
commented
1 year ago The error is due to 'bad' fixed value for b, it is changed in the latest version (1.6.7).
Note that this code is not actually evaluated when vignette is run (it has eval = FALSE).
Hi,
I started to go through you vignette to test your package. Within the analysis workflow at:
Parameter estimates will now satisfy equality:
constraints$matrix %*% pars == constraints$vector
fitMarginals(data, transforms = transforms,constraints = constraints)
I get the error:
Error in numericDeriv(form[[3L]], names(ind), env) : Missing value or an infinity produced when evaluating the model
any ideas ? Best Sigurd
Session Info
R version 4.0.5 (2021-03-31) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1
Matrix products: default
locale: [1] LC_COLLATE=German_Austria.1252 LC_CTYPE=German_Austria.1252 LC_MONETARY=German_Austria.1252 LC_NUMERIC=C
[5] LC_TIME=German_Austria.1252
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] minpack.lm_1.2-1 ggplot2_3.3.5 rgl_0.108.3 knitr_1.37 BIGL_1.6.5
loaded via a namespace (and not attached): [1] fs_1.5.0 bit64_4.0.5 progress_1.2.2 httr_1.4.2 numDeriv_2016.8-1.1 tools_4.0.5
[7] R6_2.5.0 affyio_1.60.0 DBI_1.1.1 BiocGenerics_0.36.0 colorspace_2.0-0 ade4_1.7-16
[13] withr_2.4.1 tidyselect_1.1.0 prettyunits_1.1.1 bit_4.0.4 curl_4.3 compiler_4.0.5
[19] preprocessCore_1.52.1 Biobase_2.50.0 airway_1.10.0 sandwich_3.0-0 labeling_0.4.2 scales_1.1.1
[25] DEoptimR_1.0-10 mvtnorm_1.1-1 robustbase_0.93-9 affy_1.68.0 multcompView_0.1-8 pkgdown_1.6.1
[31] digest_0.6.27 foreign_0.8-81 rmarkdown_2.6 rio_0.5.16 pkgconfig_2.0.3 htmltools_0.5.1
[37] plotrix_3.8-1 fastmap_1.1.0 htmlwidgets_1.5.3 rlang_0.4.10 readxl_1.3.1 RSQLite_2.2.2
[43] farver_2.0.3 generics_0.1.0 zoo_1.8-8 jsonlite_1.7.2 gtools_3.8.2 dplyr_1.0.3
[49] zip_2.1.1 car_3.0-10 magrittr_2.0.1 Matrix_1.3-2 Rcpp_1.0.6 munsell_0.5.0
[55] S4Vectors_0.28.1 abind_1.4-5 lifecycle_1.0.0 stringi_1.5.3 multcomp_1.4-16 yaml_2.2.1
[61] nleqslv_3.3.2 carData_3.0-4 MASS_7.3-53.1 zlibbioc_1.36.0 plyr_1.8.6 grid_4.0.5
[67] affxparser_1.62.0 blob_1.2.1 parallel_4.0.5 forcats_0.5.1 crayon_1.4.1 lattice_0.20-41
[73] splines_4.0.5 haven_2.3.1 annotate_1.68.0 hms_1.0.0 pillar_1.4.7 codetools_0.2-18
[79] stats4_4.0.5 XML_3.99-0.6 glue_1.4.2 drc_3.0-1 evaluate_0.14 data.table_1.14.0
[85] BiocManager_1.30.10 vctrs_0.3.6 cellranger_1.1.0 gtable_0.3.0 purrr_0.3.4 assertthat_0.2.1
[91] cachem_1.0.3 xfun_0.29 openxlsx_4.2.3 ALL_1.32.0 xtable_1.8-4 survival_3.2-10
[97] tibble_3.0.5 AnnotationDbi_1.52.0 memoise_2.0.0 IRanges_2.24.1 TH.data_1.0-10 ellipsis_0.3.1