openbabel-bot
commented
15 years ago Logged In: YES user_id=1918617 Originator: YES
doing some more tracing, show include files and boost/detail/workaround.hpp is where it starts to go wrong
this file contains info related to fixes for various compilers
the latest boost provides support for VC9 (VS2008) but it seems that it is not configured or called in the application
(makes sense as the recommended version is VS2005)
hopefully someone with more knowledge will be able to grok this file and get it sorted
Original comment by: peterennis
revision 2588
this one is still hanging on using boost include dir but still lots of 'shared_ptr' : is not a member of 'std::tr1'
the rest works but VS2008 consistently barfs on this one
played with the include directive in reaction.h but it is like shooting in the dark - no difference
ideas to try?
results: ------ Skipped Build: Project: OBGUI, Configuration: Debug Win32 ------ Project not selected to build for this solution configuration ------ Skipped Build: Project: OBJava, Configuration: Debug Win32 ------ Project not selected to build for this solution configuration ------ Skipped Build: Project: OBCSharp, Configuration: Debug Win32 ------ Project not selected to build for this solution configuration ------ Skipped Build: Project: OBPythonOBF, Configuration: Release Win32 ------ Project not selected to build for this solution configuration ------ Build started: Project: OBMoreFormats, Configuration: Debug Win32 ------ Copying compiler-specific babelconfig.h (if out of date) 0 File(s) copied Compiling... acrformat.cpp adfformat.cpp alchemyformat.cpp amberformat.cpp balstformat.cpp bgfformat.cpp boxformat.cpp cacaoformat.cpp cacheformat.cpp carformat.cpp cccformat.cpp chem3dformat.cpp chemdrawcdx.cpp c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(27) : error C2386: 'tr1' : a symbol with this name already exists in the current scope c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(44) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(44) : error C2065: 'shared_ptr' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(44) : error C2275: 'OpenBabel::OBMol' : illegal use of this type as an expression c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/mol.h(104) : see declaration of 'OpenBabel::OBMol' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(44) : error C2059: syntax error : '>' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(44) : error C2238: unexpected token(s) preceding ';' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(45) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(45) : error C2065: 'shared_ptr' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(45) : error C2275: 'OpenBabel::OBMol' : illegal use of this type as an expression c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/mol.h(104) : see declaration of 'OpenBabel::OBMol' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(45) : error C2059: syntax error : '>' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(45) : error C2238: unexpected token(s) preceding ';' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(46) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(46) : error C2143: syntax error : missing ';' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(46) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(46) : error C2238: unexpected token(s) preceding ';' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(47) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(47) : error C2143: syntax error : missing ';' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(47) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(47) : error C2238: unexpected token(s) preceding ';' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(61) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(61) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(61) : error C2143: syntax error : missing ',' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(64) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(64) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(64) : error C2143: syntax error : missing ',' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(67) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(67) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(67) : error C2143: syntax error : missing ',' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(70) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(70) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(70) : error C2143: syntax error : missing ',' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(73) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(73) : error C2143: syntax error : missing ';' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(73) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(74) : error C2334: unexpected token(s) preceding '{'; skipping apparent function body c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(80) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(80) : error C2143: syntax error : missing ';' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(80) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(81) : error C2334: unexpected token(s) preceding '{'; skipping apparent function body c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(88) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(88) : error C2143: syntax error : missing ';' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(88) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(89) : error C2334: unexpected token(s) preceding '{'; skipping apparent function body c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(91) : error C2039: 'shared_ptr' : is not a member of 'std::tr1' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(91) : error C2143: syntax error : missing ';' before '<' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(91) : error C4430: missing type specifier - int assumed. Note: C++ does not support default-int c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(92) : error C2334: unexpected token(s) preceding '{'; skipping apparent function body c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(56) : error C2065: '_reactants' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(56) : error C2228: left of '.size' must have class/struct/union type is ''unknown-type'' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(59) : error C2065: '_products' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(59) : error C2228: left of '.size' must have class/struct/union type is ''unknown-type'' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(62) : error C2065: '_reactants' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(62) : error C2228: left of '.push_back' must have class/struct/union type is ''unknown-type'' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(62) : error C2065: 'sp' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(65) : error C2065: '_products' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(65) : error C2228: left of '.push_back' must have class/struct/union type is ''unknown-type'' c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(65) : error C2065: 'sp' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(68) : error C2065: '_ts' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(68) : error C2065: 'sp' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(71) : error C2065: '_agent' : undeclared identifier c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(71) : error C2065: 'sp' : undeclared identifier ....\src\formats\chemdrawcdx.cpp(755) : warning C4065: switch statement contains 'default' but no 'case' labels ....\src\formats\chemdrawcdx.cpp(1087) : warning C4065: switch statement contains 'default' but no 'case' labels chemdrawct.cpp chemtoolformat.cpp cifformat.cpp C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(161) : warning C4503: 'std::_Tree<_Traits>::_Key' : decorated name length exceeded, name was truncated with [ _Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\map(78) : see reference to class template instantiation 'std::_Tree<_Traits>' being compiled
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
....\src\formats\cifformat.cpp(176) : see reference to class template instantiation 'std::map<_Kty,_Ty>' being compiled
with
[
_Kty=std::set,
_Ty=std::map<OpenBabel::ci_string,std::vector>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(181) : warning C4503: 'std::_Tree<_Traits>::_Myval' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(630) : warning C4503: 'std::_Tree<_Traits>::insert' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1023) : warning C4503: 'std::_Tree<_Traits>::equal_range' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1028) : warning C4503: 'std::_Tree<_Traits>::equal_range' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1098) : warning C4503: 'std::_Tree<_Traits>::_Eqrange' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1132) : warning C4503: 'std::_Tree<_Traits>::_Eqrange' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1187) : warning C4503: 'std::_Tree<_Traits>::_Insert' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1263) : warning C4503: 'std::_Tree<_Traits>::_Lbound' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1349) : warning C4503: 'std::_Tree<_Traits>::_Ubound' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\xtree(1408) : warning C4503: 'std::_Tree<_Traits>::_Buynode' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
....\src\formats\cifformat.cpp(284) : warning C4305: '=' : truncation from 'double' to 'float'
....\src\formats\cifformat.cpp(285) : warning C4305: '=' : truncation from 'double' to 'float'
....\src\formats\cifformat.cpp(286) : warning C4305: '*=' : truncation from 'double' to 'float'
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\vector(203) : warning C4503: 'std::_Tree<_Traits>::_Key' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\vector(203) : warning C4503: 'std::_Tree<_Traits>::_Myval' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\vector(203) : warning C4503: 'std::_Tree<_Traits>::insert' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\vector(203) : warning C4503: 'std::_Tree<_Traits>::_Insert' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\vector(203) : warning C4503: 'std::_Tree<_Traits>::_Lbound' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
C:\Program Files\Microsoft Visual Studio 9.0\VC\include\vector(203) : warning C4503: 'std::_Tree<_Traits>::_Buynode' : decorated name length exceeded, name was truncated
with
[
_Traits=std::_Tmap_traits<std::set,std::map<OpenBabel::ci_string,std::vector>,std::less<std::set>,std::allocator<std::pair<const std::set,std::map<OpenBabel::ci_string,std::vector>>>,false>
]
crkformat.cpp
CSRformat.cpp
cssrformat.cpp
dmolformat.cpp
Generating Code...
Compiling...
fastaformat.cpp
fchkformat.cpp
featformat.cpp
fhformat.cpp
freefracformat.cpp
gamessformat.cpp
gausscubeformat.cpp
....\src\formats\gausscubeformat.cpp(576) : warning C4146: unary minus operator applied to unsigned type, result still unsigned
gaussformat.cpp
gausszmatformat.cpp
ghemicalformat.cpp
gromos96format.cpp
hinformat.cpp
jaguarformat.cpp
mmcifformat.cpp
mmodformat.cpp
moldenformat.cpp
mopacformat.cpp
mpdformat.cpp
mpqcformat.cpp
msiformat.cpp
Generating Code...
Compiling...
msmsformat.cpp
nwchemformat.cpp
pcmodelformat.cpp
PQSformat.cpp
qchemformat.cpp
shelxformat.cpp
tinkerformat.cpp
turbomoleformat.cpp
unichemformat.cpp
viewmolformat.cpp
xedformat.cpp
xyzformat.cpp
yasaraformat.cpp
zindoformat.cpp
Generating Code...
Creating browse information file...
Microsoft Browse Information Maintenance Utility Version 9.00.21022
Copyright (C) Microsoft Corporation. All rights reserved.
BSCMAKE: error BK1506 : cannot open file '.\Debug\KFReader.sbr': No such file or directory
Build log was saved at "file://c:\PFE.Sardonyx\OpenBabel.SVN\windows-ae-vc2008\OBMoreFormats\Debug\BuildLog.htm"
OBMoreFormats - 62 error(s), 23 warning(s)
------ Build started: Project: OBXMLFormats, Configuration: Debug Win32 ------
Copying compiler-specific babelconfig.h (if out of date)
0 File(s) copied
Compiling...
chemkinformat.cpp
c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(26) : fatal error C1083: Cannot open include file: 'boost/shared_ptr.hpp': No such file or directory
cmlformat.cpp
c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(26) : fatal error C1083: Cannot open include file: 'boost/shared_ptr.hpp': No such file or directory
cmlreactformat.cpp
c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(26) : fatal error C1083: Cannot open include file: 'boost/shared_ptr.hpp': No such file or directory
rsmiformat.cpp
c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(26) : fatal error C1083: Cannot open include file: 'boost/shared_ptr.hpp': No such file or directory
rxnformat.cpp
c:\PFE.Sardonyx\OpenBabel.SVN\include\openbabel/reaction.h(26) : fatal error C1083: Cannot open include file: 'boost/shared_ptr.hpp': No such file or directory
Generating Code...
Creating browse information file...
Microsoft Browse Information Maintenance Utility Version 9.00.21022
Copyright (C) Microsoft Corporation. All rights reserved.
BSCMAKE: error BK1506 : cannot open file '.\Debug\chemkinformat.sbr': No such file or directory
Build log was saved at "file://c:\PFE.Sardonyx\OpenBabel.SVN\windows-ae-vc2008\OBXMLFormats\Debug\BuildLog.htm"
OBXMLFormats - 6 error(s), 0 warning(s)
========== Build: 0 succeeded, 2 failed, 12 up-to-date, 4 skipped ==========
Reported by: peterennis