Closed ShixiangWang closed 3 years ago
提示找不到 sur_plot，引用写在包内部的函数需要使用 UCSCXenaShiny:::sur_plot().
sur_plot
UCSCXenaShiny:::sur_plot()
Shiny 日志：
su: ignore --preserve-environment, it's mutually exclusive to --login. Run mode: server Checking depedencies... Loading required namespace: pacman Loading required namespace: gganatogram Loading required namespace: ggradar Starting... Listening on http://127.0.0.1:35970 Shiny app run successfully! Enjoy it! -- Xena shiny team Download datasets from server mode. Setting mirror, use hiplot: FALSE More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "tophat_star_fpkm_uq.v2_aliquot_gl.sp.log") %>% XenaBrowse() Warning: Error in sur_plot: could not find function "sur_plot" 212: eventReactiveValueFunc 210: valueFunc 197: func 195: f 194: Reduce 185: do 184: hybrid_chain 183: <reactive:eventReactive(input$go)> 182: .func 179: contextFunc 178: env$runWith 171: ctx$run 170: self$.updateValue 168: plot_func 167: renderPlot 165: func 125: drawPlot 111: <reactive:plotObj> 95: drawReactive 82: renderFunc 81: output$modules_pcawg_sur_plot-surplot 1: runApp Warning: Error in sur_plot: could not find function "sur_plot" 212: eventReactiveValueFunc 210: valueFunc 197: func 195: f 194: Reduce 185: do 184: hybrid_chain 183: <reactive:eventReactive(input$go)> 182: .func 179: contextFunc 178: env$runWith 171: ctx$run 170: self$.updateValue 168: plot_func 167: renderPlot 165: func 125: drawPlot 111: <reactive:plotObj> 95: drawReactive 82: renderFunc 81: output$modules_pcawg_sur_plot-surplot 1: runApp Try querying data #1 -> Checking if the dataset has probeMap... -> Done. ProbeMap is found. More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "tophat_star_fpkm_uq.v2_aliquot_gl.sp.log") %>% XenaBrowse() Warning: Error in sur_plot: could not find function "sur_plot" 212: eventReactiveValueFunc 210: valueFunc 197: func 195: f 194: Reduce 185: do 184: hybrid_chain 183: <reactive:eventReactive(input$go)> 182: .func 179: contextFunc 178: env$runWith 171: ctx$run 170: self$.updateValue 168: plot_func 167: renderPlot 165: func 125: drawPlot 111: <reactive:plotObj> 95: drawReactive 82: renderFunc 81: output$modules_pcawg_sur_plot-surplot 1: runApp Warning: Error in sur_plot: could not find function "sur_plot" 212: eventReactiveValueFunc 210: valueFunc 197: func 195: f 194: Reduce 185: do 184: hybrid_chain 183: <reactive:eventReactive(input$go)> 182: .func 179: contextFunc 178: env$runWith 171: ctx$run 170: self$.updateValue 168: plot_func 167: renderPlot 165: func 125: drawPlot 111: <reactive:plotObj> 95: drawReactive 82: renderFunc 81: output$modules_pcawg_sur_plot-surplot 1: runApp Try querying data #1 -> Checking if the dataset has probeMap... -> Done. No probeMap found or error happened, use old way... More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "x3t2m1.mature.TMM.mirna.matrix.log") %>% XenaBrowse() Warning: Error in sur_plot: could not find function "sur_plot" 212: eventReactiveValueFunc 210: valueFunc 197: func 195: f 194: Reduce 185: do 184: hybrid_chain 183: <reactive:eventReactive(input$go)> 182: .func 179: contextFunc 178: env$runWith 171: ctx$run 170: self$.updateValue 168: plot_func 167: renderPlot 165: func 125: drawPlot 111: <reactive:plotObj> 95: drawReactive 82: renderFunc 81: output$modules_pcawg_sur_plot-surplot 1: runApp
经检查已解决
ShixiangWang
commented
3 years ago ShixiangWang
commented
3 years ago
提示找不到
sur_plot，引用写在包内部的函数需要使用UCSCXenaShiny:::sur_plot().Shiny 日志：