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openbiox / UCSCXenaShiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny
https://openbiox.github.io/UCSCXenaShiny/
GNU General Public License v3.0
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Failure errors QuickPanCan Analysis CCLE: Drug response Association and CCLE: Drug response #252

Closed quiquemedina closed 1 year ago

quiquemedina commented 1 year ago

The analysis with the functions CCLE: Drug response Association and CCLE: Drug response fail. The output errors are (see print screen attached):

Error: Data load failed Error: None of your input genes exist in CCLE data (I tried more than 20 genes)

I am running UCSCXenaShiny v1.1.9 based on UCSCXenaTools v1.4.8 from R Studio R4.2.2

Could you please verify those functionalities?

Captura de tela 2023-02-16 145303 Captura de tela 2023-02-16 145245 Screenshot 2023-02-16 144649 Screenshot 2023-02-16 144319 Regards Enrique

ShixiangWang commented 1 year ago

Hi Enrique,

This should be a data loading issue, please check your terminal log and see if the data failed in downloading.

You can check the function at https://shiny.hiplot.cn/ucsc-xena-shiny/ , it works well.

image

quiquemedina commented 1 year ago

Got it!

The functions do work from [https://shiny.hiplot.cn/ucsc-xena-shiny/].

I´ll check my terminal log and see if the data failed in downloading.

Many thanks for the expedite and helpfull reply

Enrique