SIGNATURES PROBLEMS FOR CCLE DATA

[Tardins]

Greetings!

When querying with signatures in Analyze Association between Gene (Signature) and Drug Response with CCLE Data, and Visualize Gene and Drug-Target Association with CCLE Data, I have had some problems. The shiny showns this message: Space is detected in your input. It's invalid. If you want to use genomic signature feature, please input a gene list.

I'm sure that I am using the genetic signatures correctly, as I can perform my analyzes in the other analysis categories of xena shiny

I would like to know if the analysis category Analyze Association between Gene (Signature) and Drug Response with CCLE Data, or Visualize Gene and Drug-Target Association with CCLE Data allow the use of genetic signatures, or just analyze gene by gene, or this could just be a bug.

Regards,

Alan T.

[ShixiangWang]

Do you use the tool locally?

[ShixiangWang]

Or by the hiplot platform?

[ShixiangWang]

@Tardins

Hi, T. XenaShiny on Hiplot is working now.

Thanks to @Miachol for maintaining it on hiplot.

[Tardins]

Hi, Thanks a lot for the feedback. I was trying to use the hiplot platform, but I also tried using the R or Python environment. In both I got no results. However, I was using a different way to insert the signatures [ex: (TP53 + KRAS + H19)], and I see that you used a different way than mine. But I have already managed to carry out the analyzes I would like, using the way you demonstrated. Thanks a lot for the help.

[ShixiangWang]

Great to hear that.