部署更新 - Githubissues

openbiox / UCSCXenaShiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny

https://openbiox.github.io/UCSCXenaShiny/

GNU General Public License v3.0

83 stars 29 forks source link

部署更新 #294

Closed ShixiangWang closed 3 months ago

ShixiangWang commented 6 months ago

在正式发布 XenaShiny v2 之前，确定以下一系列的更新是否完成：

[x] 版本号（release）
[x] README 文档
[x] Vignette(s)
[x] Pkgdown sites
[x] Function documents
[x] Docker 镜像测试（master）
[x] CRAN 发布

@lishensuo 你有想到的一些点可以添加，目前是计划阶段。

ShixiangWang commented 5 months ago

[x] 介绍本地部署下载 Zenodo 并配置缓存目录的说明（我在自己几台电脑上R自动下载Zenodo数据都有问题～）。

ShixiangWang commented 5 months ago

README 建议用户使用shinyapp要进行相关设置

xena.cacheDir = "/xena"
xena.zenodoDir = "/xena/datasets"

options(xena.cacheDir = xena.cacheDir, xena.zenodoDir = xena.zenodoDir)

options(xena.runMode = "server")

ShixiangWang commented 4 months ago

@lishensuo 先基本完成修改后提醒我推送 CRAN，后续再测试镜像是否能work

ShixiangWang commented 3 months ago

docker已经 working

ShixiangWang commented 3 months ago

finished at https://github.com/openbiox/UCSCXenaShiny/commit/650a8cfb76ec22ac690f4585a7ad2b7ba0377014