openbiox / UCSCXenaShiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny
https://openbiox.github.io/UCSCXenaShiny/
GNU General Public License v3.0
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get_pancan_gene_value() failed #333

Open 234pk opened 1 week ago

234pk commented 1 week ago

get_pancan_gene_value("FOXO3") Try querying data #1 Try querying data #2 Try querying data #3 Try querying data #4 Try querying data #5 value[3L]里有警告: Tried 5 times but failed, please check URL or your internet connection or try it later! Saving data to file C:\Users\16500\AppData\Local\Temp\RtmpywyJuj/UCSCXenaShiny/08f944daca2796f2007b1fd22bbdb22c.rds More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "TcgaTargetGtex_rsem_gene_tpm") %>% XenaBrowse() $expression NULL $unit [1] "log2(tpm+0.001)"

get_pcawg_gene_value("KRAS") Try querying data #1 Try querying data #2 Try querying data #3 Try querying data #4 Try querying data #5 value[3L]里有警告: Tried 5 times but failed, please check URL or your internet connection or try it later! Saving data to file C:\Users\16500\AppData\Local\Temp\RtmpywyJuj/UCSCXenaShiny/00c1406cd3e8b2699869c1ae21952b93.rds More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "tophat_star_fpkm_uq.v2_aliquot_gl.sp.log") %>% XenaBrowse() $data NULL

$unit [1] "log2(fpkm-uq+0.001)"

lishensuo commented 6 days ago

It could be due to your network. As you can see below, the test on my side is OK. image