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openbiox / UCSCXenaShiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny
https://openbiox.github.io/UCSCXenaShiny/
GNU General Public License v3.0
83 stars 29 forks source link

文章预发布准备工作 #81

Closed ShixiangWang closed 4 years ago

ShixiangWang commented 4 years ago

暂时以预发表为主，提供一个引用源和成果项目。

参与作者按贡献排序。通讯等以讨论后决定。

ShixiangWang commented 4 years ago

@Byronxy 抽空提供一篇 NAR 作为格式参考？

ShixiangWang commented 4 years ago

我再 @Byronxy 你一下，抽空提供一篇 NAR 作为格式参考？

ShixiangWang commented 4 years ago

请本项目所有参与人员看到该信息后检查和提供个人学校/单位信息（ORCID），个人导师信息（有的话且需要纳入的话）。

@kaigu1990 @Byronxy @longfei8533 @yinlisssss @fei0810 

---
title: 'UCSCXenaShiny: an R package to ...'
authors:
- affiliation: '1, 2, 3, 4'
  name: Shixiang Wang
  orcid: 0000-0001-9855-7357
- affiliation: 5
  name: Yi Xiong
  orcid: 0000-0002-4370-9824
- affiliation: 6
  name: Kai Gu
  orcid: 0000-0002-0177-0774
- affiliation: 7
  name: Longfei Zhao
  orcid: 0000-0002-6277-0137
- affiliation: 8
  name: Yin Li
  orcid: xxx
- affiliation: 9
  name: Fei Zhao
  orcid: xxx
- affiliation: 2
  name: Xuesong Liu
  orcid: 0000-0002-7736-0077
date: "22 June 2020"
bibliography: paper.bib
affiliations:
- index: 1
  name: Openbiox Community
- index: 2
  name: School of Life Science and Technology, ShanghaiTech University
- index: 3
  name: Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences
- index: 4
  name: University of Chinese Academy of Sciences
---
Byronxy commented 4 years ago

2019-2020 每年NAR有database issues和server issues https://academic.oup.com/nar/issue/47/W1 https://academic.oup.com/nar/issue/48/D1 Guidelines : https://academic.oup.com/nar/pages/Ms_Prep_Database https://academic.oup.com/nar/pages/Submission_Webserver

Byronxy commented 4 years ago

https://academic.oup.com/nar/article/48/D1/D34/5581730 以这篇为例，就是图表的内容一般就是流程图+项目介绍

kaigu1990 commented 4 years ago

ORCID已检查，单位写"Roche Diagnostics (Shanghai) Limited"即可，多谢了~

Byronxy commented 4 years ago

修改一下以及更新一下作者信息

---
title: 'UCSCXenaShiny: an R package to ...'
authors:
- affiliation: '1, 2, 3, 4'
  name: Shixiang Wang
  orcid: 0000-0001-9855-7357
- affiliation: '1, 5, 6'
  name: Yi Xiong
  orcid: 0000-0002-4370-9824
- affiliation: ‘1, 7’
  name: Kai Gu
  orcid: 0000-0002-0177-0774
- affiliation: ‘1, 8’
  name: Longfei Zhao
  orcid: 0000-0002-6277-0137
- affiliation: ‘1, 9’
  name: Yin Li
  orcid: xxx
- affiliation: ‘1, 10'
  name: Fei Zhao
  orcid: xxx
- affiliation: 6
 name: Xuejun Li
 orcid: 0000-0001-6406-4423
- affiliation: 2
  name: Xuesong Liu
  orcid: 0000-0002-7736-0077

date: "23 June 2020"
bibliography: paper.bib
affiliations: 
- index: 1
  name: Openbiox Community
- index: 2
  name: School of Life Science and Technology, ShanghaiTech University
- index: 3
  name: Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences
- index: 4
  name: University of Chinese Academy of Sciences
- index: 5
  name: Xiangya School of Medicine, Central South University
- index: 6
  name: Department of Neurosurgery, Xiangya Hospital, Central South University
- index: 7
  name: Roche Diagnostics (Shanghai) Limited
- index: 8
  name: Zhengzhou University
---
ShixiangWang commented 4 years ago

/remind me to finish this process in a month

reminders[bot] commented 4 years ago

@ShixiangWang set a reminder for Jul 24th 2020

fei0810 commented 4 years ago

这就要变成文章了么，有点强。


---
title: 'UCSCXenaShiny: an R package to ...'
authors:
- affiliation: '1, 2, 3, 4'
  name: Shixiang Wang
  orcid: 0000-0001-9855-7357
- affiliation: '1, 5, 6'
  name: Yi Xiong
  orcid: 0000-0002-4370-9824
- affiliation: ‘1, 7’
  name: Kai Gu
  orcid: 0000-0002-0177-0774
- affiliation: ‘1, 8’
  name: Longfei Zhao
  orcid: 0000-0002-6277-0137
- affiliation: ‘1, 9’
  name: Yin Li
  orcid: xxx
- affiliation: ‘1, 4, 9'
  name: Fei Zhao
  orcid: 0000-0002-9087-5243
- affiliation: 6
 name: Xuejun Li
 orcid: 0000-0001-6406-4423
- affiliation: 2
  name: Xuesong Liu
  orcid: 0000-0002-7736-0077

date: "23 June 2020"
bibliography: paper.bib
affiliations: 
- index: 1
  name: Openbiox Community
- index: 2
  name: School of Life Science and Technology, ShanghaiTech University
- index: 3
  name: Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences
- index: 4
  name: University of Chinese Academy of Sciences
- index: 5
  name: Xiangya School of Medicine, Central South University
- index: 6
  name: Department of Neurosurgery, Xiangya Hospital, Central South University
- index: 7
  name: Roche Diagnostics (Shanghai) Limited
- index: 8
  name: Zhengzhou University
- index: 9
  name: CAS Center for Excellence in Molecular Plant Sciences

---
ShixiangWang commented 4 years ago

看了下NAR Web 工具的定位可能更加符合

ShixiangWang commented 4 years ago

NAR 的文字太长了，写不来，我还是参考 Bioinformatics 文章写写~

参考文：https://academic.oup.com/bioinformatics/article/34/9/1615/4764001?searchresult=1

ShixiangWang commented 4 years ago

@yinlisssss @longfei8533 看到的话 update 一下自己的信息~

yinlisssss commented 4 years ago

title: 'UCSCXenaShiny: an R package to ...' authors:

date: "23 June 2020" bibliography: paper.bib affiliations:

longfei8533 commented 4 years ago

@yinlisssss @longfei8533 看到的话 update 一下自己的信息~

我的已经修改过了

longfei8533 commented 4 years ago

title: 'UCSCXenaShiny: an R package to ...' authors:

  • affiliation: '1, 2, 3, 4' name: Shixiang Wang orcid: 0000-0001-9855-7357
  • affiliation: '1, 5, 6' name: Yi Xiong orcid: 0000-0002-4370-9824
  • affiliation: ‘1, 7’ name: Kai Gu orcid: 0000-0002-0177-0774
  • affiliation: ‘1, 8’ name: Longfei Zhao orcid: 0000-0002-6277-0137
  • affiliation: ‘1, 10‘ name: Yin Li orcid: xxx
  • affiliation: ‘1, 4, 9' name: Fei Zhao orcid: 0000-0002-9087-5243
  • affiliation: 6 name: Xuejun Li orcid: 0000-0001-6406-4423
  • affiliation: 2 name: Xuesong Liu orcid: 0000-0002-7736-0077

date: "23 June 2020" bibliography: paper.bib affiliations:

  • index: 1 name: Openbiox Community
  • index: 2 name: School of Life Science and Technology, ShanghaiTech University
  • index: 3 name: Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences
  • index: 4 name: University of Chinese Academy of Sciences
  • index: 5 name: Xiangya School of Medicine, Central South University
  • index: 6 name: Department of Neurosurgery, Xiangya Hospital, Central South University
  • index: 7 name: Roche Diagnostics (Shanghai) Limited
  • index: 8 name: School of Pharmaceutical Sciences, Zhengzhou University
  • index: 9 name: CAS Center for Excellence in Molecular Plant Sciences
  • index: 10 name: Department of Thoracic Surgery, Zhongshan hospital, Fudan university
ShixiangWang commented 4 years ago

好的 我尽量一两周内整个小短文预发表。软件包本身还有很多功能需要开发和优化，一起继续加油⛽️有什么想法都可以issue讨论

ShixiangWang commented 4 years ago

请大家提供下自己的邮箱 @fei0810 @Byronxy @kaigu1990 @yinlisssss @longfei8533

longfei8533 commented 4 years ago

请大家提供下自己的邮箱 @fei0810 @Byronxy @kaigu1990 @yinlisssss @longfei8533

longfei8533@live.cn

Byronxy commented 4 years ago

请大家提供下自己的邮箱 @fei0810 @Byronxy @kaigu1990 @yinlisssss @longfei8533

Yi Xiong: xiongyi123@csu.edu.cn Xuejun Li: lxjneuro@csu.edu.cn

kaigu1990 commented 4 years ago

请大家提供下自己的邮箱 @fei0810 @Byronxy @kaigu1990 @yinlisssss @longfei8533

gukai1212@163.com

reminders[bot] commented 4 years ago

:wave: @ShixiangWang, finish this process