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openbiox / UCSCXenaShiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.hiplot.cn/ucsc-xena-shiny/, https://shiny.zhoulab.ac.cn/UCSCXenaShiny
https://openbiox.github.io/UCSCXenaShiny/
GNU General Public License v3.0
94 stars 31 forks source link

CCLE 表达获取 #95

Closed ShixiangWang closed 4 years ago

ShixiangWang commented 4 years ago

/remind me in a week to implement this feature

reminders[bot] commented 4 years ago

@ShixiangWang set a reminder for Jul 12th 2020

ShixiangWang commented 4 years ago

考虑拓展到所有类似的表达数据中

ShixiangWang commented 4 years ago

测试钩子

reminders[bot] commented 4 years ago

:wave: @ShixiangWang, implement this feature

ShixiangWang commented 4 years ago

/remind me in a week to finish this task

reminders[bot] commented 4 years ago

@ShixiangWang set a reminder for Jul 19th 2020

ShixiangWang commented 4 years ago

加上 GISTIC 基因水平数据获取 尽量这两天写好

ShixiangWang commented 4 years ago

CCLE 数据页面 https://xenabrowser.net/datapages/?cohort=Cancer%20Cell%20Line%20Encyclopedia%20(CCLE)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443，需要一个系列函数获取各类信息。

ShixiangWang commented 4 years ago

CCLE 突变数据格式都属于 Xena 中的 sparse 格式，需要单独写一个统一的接口再进行实现，问题转移到 https://github.com/ropensci/UCSCXenaTools/issues/29

/remind me to finish querying CCLE gene mutation status data feature.

reminders[bot] commented 4 years ago

@ShixiangWang we had trouble parsing your reminder. Try:

/remind me [what] [when]

ShixiangWang commented 4 years ago

/remind me to finish querying CCLE gene mutation status data feature in a week.

reminders[bot] commented 4 years ago

@ShixiangWang set a reminder for Jul 25th 2020

reminders[bot] commented 4 years ago

:wave: @ShixiangWang, finish querying CCLE gene mutation status data feature .

ShixiangWang commented 4 years ago

这机器人。。。