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opencb / biodata

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
Apache License 2.0
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avro/Cytoband and core/Cytoband - do we need both? #180

Open julie-sullivan opened 4 years ago

julie-sullivan commented 4 years ago 
// avro
   private java.lang.String chromosome;
   private java.lang.String stain;
   private java.lang.String name;
   private java.lang.Integer start;
   private java.lang.Integer end;
// core
    private String name;
    private String stain;
    private int start;
    private int end;

REST and the variant calculator use the avro one, and the chromosome collection seems to use the one from core.

julie-sullivan commented 4 years ago

variantannotation is in avro, needs to be in avro and needs a cytoband.

So we should delete the core cytoband as a duplicate, and keep the avro one.