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opencb / cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data
Apache License 2.0
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API error: meta/status and meta/about generating stacktrace #499

Closed julie-sullivan closed 4 years ago

julie-sullivan commented 4 years ago 
[http-nio-8080-exec-9] INFO org.opencb.cellbase.server.rest.MetaWSServer - http://localhost:8080/cellbase-5.0.0-SNAPSHOT/webservices/rest/v4/meta/about {}      {"exclude":["_id","_chunkIds"]} 10      ok
queryResponse.getResponses().get(0).toString() = CellBaseDataResult{id='about', time=0, events=null, numResults=0, results=[{Program: =CellBase (OpenCB), Description: =High-Performance NoSQL database and RESTful web services to access the
 most relevant biological data, Git commit: =5abfa9178e5cddb32dd669563aba5a8baae9dd9e, Version: =5.0.0-SNAPSHOT, Git branch: =next}], resultType='null', numMatches=0, numInserted=0, numUpdated=0, numDeleted=0, attributes=null}
java.lang.IllegalArgumentException: Schema specific part is opaque.
        at org.glassfish.jersey.uri.internal.JerseyUriBuilder.checkSsp(JerseyUriBuilder.java:690)
        at org.glassfish.jersey.uri.internal.JerseyUriBuilder.path(JerseyUriBuilder.java:332)
        at org.glassfish.jersey.uri.internal.JerseyUriBuilder.path(JerseyUriBuilder.java:48)

This error happens in tomcat and REST

julie-sullivan commented 4 years ago 
[http-nio-8080-exec-10] INFO org.opencb.cellbase.server.rest.CellBaseExceptionMapper - http://localhost:8080/cellbase-5.0.0-SNAPSHOT/webservices/rest/v4/meta/hsapiens/status   {"limit":"-1","count":"false","skip":"-1","skipCount":"false",
"Output format":"json"}   error
java.lang.IllegalArgumentException: Schema specific part is opaque.
julie-sullivan commented 4 years ago

This is the error @wbari gets ONLY in REST. Tomcat is okay.

SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/opt/cellbase/libs/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/opt/cellbase/libs/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_PROTO'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_ADDR'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_SERVICE_HOST'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_HOME'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_SERVICE_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_SERVICE_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_PROTO'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_ADDR'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_SERVICE_HOST'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_PORT'
2019-12-09 10:48:12 [main] INFO  RestServer:55 - ========================================================================
2019-12-09 10:48:12 [main] INFO  RestServer:56 - | Starting Cellbase REST server, initializing RestServer
2019-12-09 10:48:12 [main] INFO  RestServer:57 - | This message must appear only once.
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_PROTO'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_ADDR'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_SERVICE_HOST'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_HOME'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_SERVICE_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_SERVICE_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_PROTO'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_ADDR'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_SERVICE_HOST'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT'
2019-12-09 10:48:12 [main] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_PORT'
2019-12-09 10:48:12 [main] INFO  RestServer:63 - |  * Configuration folder: '/opt/cellbase/conf'
2019-12-09 10:48:12 [main] INFO  RestServer:64 - |  * Configuration file: configuration.yml'
2019-12-09 10:48:12 [main] INFO  RestServer:65 - |  * Port: '9090'
2019-12-09 10:48:12 [main] INFO  RestServer:71 - ========================================================================

2019-12-09 10:48:12 [main] INFO  log:193 - Logging initialized @670ms to org.eclipse.jetty.util.log.Slf4jLog
2019-12-09 10:48:12 [main] INFO  Server:370 - jetty-9.4.17.v20190418; built: 2019-04-18T19:45:35.259Z; git: aa1c656c315c011c01e7b21aabb04066635b9f67; jvm 1.8.0_212-b04
2019-12-09 10:48:13 [main] INFO  StandardDescriptorProcessor:283 - NO JSP Support for /cellbase, did not find org.eclipse.jetty.jsp.JettyJspServlet
2019-12-09 10:48:13 [main] INFO  session:365 - DefaultSessionIdManager workerName=node0
2019-12-09 10:48:13 [main] INFO  session:370 - No SessionScavenger set, using defaults
2019-12-09 10:48:13 [main] INFO  session:149 - node0 Scavenging every 660000ms
SLF4J: Class path contains multiple SLF4J bindings.
SLF4J: Found binding in [jar:file:/tmp/jetty-0.0.0.0-9090-cellbase.war-_cellbase-any-7871836613559534111.dir/webapp/WEB-INF/lib/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/tmp/jetty-0.0.0.0-9090-cellbase.war-_cellbase-any-7871836613559534111.dir/webapp/WEB-INF/lib/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/opt/cellbase/libs/slf4j-log4j12-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: Found binding in [jar:file:/opt/cellbase/libs/slf4j-simple-1.7.25.jar!/org/slf4j/impl/StaticLoggerBinder.class]
SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
SLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]
2019-12-09 10:48:14 [main] INFO  ContextHandler:855 - Started o.e.j.w.WebAppContext@5158b42f{CellBase Server,/cellbase,file:///tmp/jetty-0.0.0.0-9090-cellbase.war-_cellbase-any-7871836613559534111.dir/webapp/,AVAILABLE}{/opt/cellbase/cellbase.war}
2019-12-09 10:48:14 [main] INFO  AbstractConnector:292 - Started ServerConnector@1139b2f3{HTTP/1.1,[http/1.1]}{0.0.0.0:9090}
2019-12-09 10:48:14 [main] INFO  Server:410 - Started @2980ms
2019-12-09 10:48:14 [main] INFO  RestServer:94 - REST server started, listening on port: 9090 at http://10.244.2.79:9090/cellbase
2019-12-09 10:53:35 [qtp1307904972-13] INFO  ResourceService:237 - content=ResourceHttpContent@7347a454{r=file:///tmp/jetty-0.0.0.0-9090-cellbase.war-_cellbase-any-7871836613559534111.dir/webapp/webservices/,ct=null,c=false}
2019-12-09 10:53:35 [qtp1307904972-13] INFO  ResourceService:237 - content=CachedContent@3ad54f16{r=file:///tmp/jetty-0.0.0.0-9090-cellbase.war-_cellbase-any-7871836613559534111.dir/webapp/webservices/index.html,e=true,lm=Last-Modified: Thu, 10 Oct 2019 15:13:24 GMT,ct=Content-Type: text/html,c=0}
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_PROTO'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_ADDR'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_SERVICE_HOST'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_HOME'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_SERVICE_PORT'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_PORT'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_SERVICE_PORT'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_PROTO'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP_ADDR'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_SERVICE_HOST'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT_8080_TCP'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_PORT'
2019-12-09 10:53:51 [qtp1307904972-14] WARN  CellBaseConfiguration:124 - Unknown env var 'CELLBASE_SERVICE_JETTY_PORT_8080_TCP_PORT'
Dec 09, 2019 10:53:51 AM org.glassfish.jersey.internal.Errors logErrors
WARNING: The following warnings have been detected: WARNING: Unknown HK2 failure detected:
MultiException stack 1 of 4
java.lang.IllegalArgumentException: interface org.glassfish.hk2.api.ProxyCtl is not visible from class loader
    at java.lang.reflect.Proxy$ProxyClassFactory.apply(Proxy.java:581)
    at java.lang.reflect.Proxy$ProxyClassFactory.apply(Proxy.java:557)
    at java.lang.reflect.WeakCache$Factory.get(WeakCache.java:230)
    at java.lang.reflect.WeakCache.get(WeakCache.java:127)
    at java.lang.reflect.Proxy.getProxyClass0(Proxy.java:419)
    at java.lang.reflect.Proxy.newProxyInstance(Proxy.java:719)
    at org.jvnet.hk2.internal.ProxyUtilities$3.run(ProxyUtilities.java:120)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.jvnet.hk2.internal.ProxyUtilities.secureCreate(ProxyUtilities.java:115)
    at org.jvnet.hk2.internal.ProxyUtilities.generateProxy(ProxyUtilities.java:194)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2074)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.ContextInjectionResolverImpl.resolve(ContextInjectionResolverImpl.java:103)
    at org.jvnet.hk2.internal.ClazzCreator.resolve(ClazzCreator.java:188)
    at org.jvnet.hk2.internal.ClazzCreator.resolveAllDependencies(ClazzCreator.java:205)
    at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:334)
    at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:463)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:59)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:47)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture$1.call(Cache.java:74)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture.run(Cache.java:131)
    at org.glassfish.hk2.utilities.cache.Cache.compute(Cache.java:176)
    at org.jvnet.hk2.internal.SingletonContext.findOrCreate(SingletonContext.java:98)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2102)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.lambda$getAllServiceHolders$0(AbstractHk2InjectionManager.java:136)
    at java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
    at java.util.LinkedList$LLSpliterator.forEachRemaining(LinkedList.java:1235)
    at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
    at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
    at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
    at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
    at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.getAllServiceHolders(AbstractHk2InjectionManager.java:140)
    at org.glassfish.jersey.inject.hk2.ImmediateHk2InjectionManager.getAllServiceHolders(ImmediateHk2InjectionManager.java:30)
    at org.glassfish.jersey.internal.inject.Providers.getServiceHolders(Providers.java:307)
    at org.glassfish.jersey.internal.inject.Providers.getAllServiceHolders(Providers.java:279)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.lambda$createLazyExceptionMappers$1(ExceptionMapperFactory.java:177)
    at org.glassfish.jersey.internal.util.collection.Values$LazyValueImpl.get(Values.java:317)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.find(ExceptionMapperFactory.java:115)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.findMapping(ExceptionMapperFactory.java:102)
    at org.glassfish.jersey.server.ServerRuntime$Responder.mapException(ServerRuntime.java:523)
    at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:403)
    at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:261)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
    at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:232)
    at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:680)
    at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:392)
    at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:365)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:318)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:873)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1623)
    at org.opencb.cellbase.server.rest.CORSFilter.doFilter(CORSFilter.java:43)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1602)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:540)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:146)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:257)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1700)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1345)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:203)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:480)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1667)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:201)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1247)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:144)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:505)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:370)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:267)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:305)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:333)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:310)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:168)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:126)
    at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:366)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:786)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:743)
    at java.lang.Thread.run(Thread.java:748)
MultiException stack 2 of 4
java.lang.IllegalArgumentException: While attempting to create a Proxy for javax.ws.rs.core.UriInfo in scope org.glassfish.jersey.process.internal.RequestScoped an error occured while creating the proxy
    at org.jvnet.hk2.internal.ProxyUtilities.generateProxy(ProxyUtilities.java:201)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2074)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.ContextInjectionResolverImpl.resolve(ContextInjectionResolverImpl.java:103)
    at org.jvnet.hk2.internal.ClazzCreator.resolve(ClazzCreator.java:188)
    at org.jvnet.hk2.internal.ClazzCreator.resolveAllDependencies(ClazzCreator.java:205)
    at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:334)
    at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:463)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:59)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:47)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture$1.call(Cache.java:74)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture.run(Cache.java:131)
    at org.glassfish.hk2.utilities.cache.Cache.compute(Cache.java:176)
    at org.jvnet.hk2.internal.SingletonContext.findOrCreate(SingletonContext.java:98)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2102)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.lambda$getAllServiceHolders$0(AbstractHk2InjectionManager.java:136)
    at java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
    at java.util.LinkedList$LLSpliterator.forEachRemaining(LinkedList.java:1235)
    at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
    at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
    at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
    at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
    at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.getAllServiceHolders(AbstractHk2InjectionManager.java:140)
    at org.glassfish.jersey.inject.hk2.ImmediateHk2InjectionManager.getAllServiceHolders(ImmediateHk2InjectionManager.java:30)
    at org.glassfish.jersey.internal.inject.Providers.getServiceHolders(Providers.java:307)
    at org.glassfish.jersey.internal.inject.Providers.getAllServiceHolders(Providers.java:279)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.lambda$createLazyExceptionMappers$1(ExceptionMapperFactory.java:177)
    at org.glassfish.jersey.internal.util.collection.Values$LazyValueImpl.get(Values.java:317)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.find(ExceptionMapperFactory.java:115)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.findMapping(ExceptionMapperFactory.java:102)
    at org.glassfish.jersey.server.ServerRuntime$Responder.mapException(ServerRuntime.java:523)
    at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:403)
    at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:261)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
    at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:232)
    at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:680)
    at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:392)
    at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:365)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:318)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:873)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1623)
    at org.opencb.cellbase.server.rest.CORSFilter.doFilter(CORSFilter.java:43)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1602)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:540)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:146)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:257)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1700)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1345)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:203)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:480)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1667)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:201)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1247)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:144)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:505)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:370)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:267)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:305)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:333)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:310)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:168)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:126)
    at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:366)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:786)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:743)
    at java.lang.Thread.run(Thread.java:748)
MultiException stack 3 of 4
java.lang.IllegalArgumentException: While attempting to resolve the dependencies of org.opencb.cellbase.server.rest.CellBaseExceptionMapper errors were found
    at org.jvnet.hk2.internal.ClazzCreator.resolveAllDependencies(ClazzCreator.java:224)
    at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:334)
    at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:463)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:59)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:47)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture$1.call(Cache.java:74)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture.run(Cache.java:131)
    at org.glassfish.hk2.utilities.cache.Cache.compute(Cache.java:176)
    at org.jvnet.hk2.internal.SingletonContext.findOrCreate(SingletonContext.java:98)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2102)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.lambda$getAllServiceHolders$0(AbstractHk2InjectionManager.java:136)
    at java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
    at java.util.LinkedList$LLSpliterator.forEachRemaining(LinkedList.java:1235)
    at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
    at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
    at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
    at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
    at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.getAllServiceHolders(AbstractHk2InjectionManager.java:140)
    at org.glassfish.jersey.inject.hk2.ImmediateHk2InjectionManager.getAllServiceHolders(ImmediateHk2InjectionManager.java:30)
    at org.glassfish.jersey.internal.inject.Providers.getServiceHolders(Providers.java:307)
    at org.glassfish.jersey.internal.inject.Providers.getAllServiceHolders(Providers.java:279)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.lambda$createLazyExceptionMappers$1(ExceptionMapperFactory.java:177)
    at org.glassfish.jersey.internal.util.collection.Values$LazyValueImpl.get(Values.java:317)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.find(ExceptionMapperFactory.java:115)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.findMapping(ExceptionMapperFactory.java:102)
    at org.glassfish.jersey.server.ServerRuntime$Responder.mapException(ServerRuntime.java:523)
    at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:403)
    at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:261)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
    at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:232)
    at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:680)
    at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:392)
    at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:365)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:318)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:873)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1623)
    at org.opencb.cellbase.server.rest.CORSFilter.doFilter(CORSFilter.java:43)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1602)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:540)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:146)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:257)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1700)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1345)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:203)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:480)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1667)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:201)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1247)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:144)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:505)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:370)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:267)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:305)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:333)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:310)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:168)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:126)
    at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:366)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:786)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:743)
    at java.lang.Thread.run(Thread.java:748)
MultiException stack 4 of 4
java.lang.IllegalStateException: Unable to perform operation: resolve on org.opencb.cellbase.server.rest.CellBaseExceptionMapper
    at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:363)
    at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:463)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:59)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:47)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture$1.call(Cache.java:74)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture.run(Cache.java:131)
    at org.glassfish.hk2.utilities.cache.Cache.compute(Cache.java:176)
    at org.jvnet.hk2.internal.SingletonContext.findOrCreate(SingletonContext.java:98)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2102)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.lambda$getAllServiceHolders$0(AbstractHk2InjectionManager.java:136)
    at java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
    at java.util.LinkedList$LLSpliterator.forEachRemaining(LinkedList.java:1235)
    at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
    at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
    at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
    at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
    at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.getAllServiceHolders(AbstractHk2InjectionManager.java:140)
    at org.glassfish.jersey.inject.hk2.ImmediateHk2InjectionManager.getAllServiceHolders(ImmediateHk2InjectionManager.java:30)
    at org.glassfish.jersey.internal.inject.Providers.getServiceHolders(Providers.java:307)
    at org.glassfish.jersey.internal.inject.Providers.getAllServiceHolders(Providers.java:279)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.lambda$createLazyExceptionMappers$1(ExceptionMapperFactory.java:177)
    at org.glassfish.jersey.internal.util.collection.Values$LazyValueImpl.get(Values.java:317)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.find(ExceptionMapperFactory.java:115)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.findMapping(ExceptionMapperFactory.java:102)
    at org.glassfish.jersey.server.ServerRuntime$Responder.mapException(ServerRuntime.java:523)
    at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:403)
    at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:261)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
    at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:232)
    at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:680)
    at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:392)
    at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:365)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:318)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:873)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1623)
    at org.opencb.cellbase.server.rest.CORSFilter.doFilter(CORSFilter.java:43)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1602)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:540)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:146)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:257)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1700)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1345)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:203)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:480)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1667)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:201)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1247)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:144)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:505)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:370)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:267)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:305)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:333)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:310)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:168)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:126)
    at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:366)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:786)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:743)
    at java.lang.Thread.run(Thread.java:748)

2019-12-09 10:53:51 [qtp1307904972-14] WARN  HttpChannel:597 - /cellbase/webservices/rest/v4/meta/hsapiens/status
javax.servlet.ServletException: A MultiException has 4 exceptions.  They are:
1. java.lang.IllegalArgumentException: interface org.glassfish.hk2.api.ProxyCtl is not visible from class loader
2. java.lang.IllegalArgumentException: While attempting to create a Proxy for javax.ws.rs.core.UriInfo in scope org.glassfish.jersey.process.internal.RequestScoped an error occured while creating the proxy
3. java.lang.IllegalArgumentException: While attempting to resolve the dependencies of org.opencb.cellbase.server.rest.CellBaseExceptionMapper errors were found
4. java.lang.IllegalStateException: Unable to perform operation: resolve on org.opencb.cellbase.server.rest.CellBaseExceptionMapper

    at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:408)
    at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:346)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:365)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:318)
    at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:205)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:873)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1623)
    at org.opencb.cellbase.server.rest.CORSFilter.doFilter(CORSFilter.java:43)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1602)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:540)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:146)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:257)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1700)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:255)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1345)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:203)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:480)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1667)
    at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:201)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1247)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:144)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
    at org.eclipse.jetty.server.Server.handle(Server.java:505)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:370)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:267)
    at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:305)
    at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
    at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:333)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:310)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:168)
    at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:126)
    at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:366)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:786)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:743)
    at java.lang.Thread.run(Thread.java:748)
Caused by: A MultiException has 4 exceptions.  They are:
1. java.lang.IllegalArgumentException: interface org.glassfish.hk2.api.ProxyCtl is not visible from class loader
2. java.lang.IllegalArgumentException: While attempting to create a Proxy for javax.ws.rs.core.UriInfo in scope org.glassfish.jersey.process.internal.RequestScoped an error occured while creating the proxy
3. java.lang.IllegalArgumentException: While attempting to resolve the dependencies of org.opencb.cellbase.server.rest.CellBaseExceptionMapper errors were found
4. java.lang.IllegalStateException: Unable to perform operation: resolve on org.opencb.cellbase.server.rest.CellBaseExceptionMapper

    at org.jvnet.hk2.internal.Collector.throwIfErrors(Collector.java:65)
    at org.jvnet.hk2.internal.ClazzCreator.resolveAllDependencies(ClazzCreator.java:226)
    at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:334)
    at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:463)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:59)
    at org.jvnet.hk2.internal.SingletonContext$1.compute(SingletonContext.java:47)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture$1.call(Cache.java:74)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at org.glassfish.hk2.utilities.cache.Cache$OriginThreadAwareFuture.run(Cache.java:131)
    at org.glassfish.hk2.utilities.cache.Cache.compute(Cache.java:176)
    at org.jvnet.hk2.internal.SingletonContext.findOrCreate(SingletonContext.java:98)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2102)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.lambda$getAllServiceHolders$0(AbstractHk2InjectionManager.java:136)
    at java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
    at java.util.LinkedList$LLSpliterator.forEachRemaining(LinkedList.java:1235)
    at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:482)
    at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:472)
    at java.util.stream.ReduceOps$ReduceOp.evaluateSequential(ReduceOps.java:708)
    at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
    at java.util.stream.ReferencePipeline.collect(ReferencePipeline.java:499)
    at org.glassfish.jersey.inject.hk2.AbstractHk2InjectionManager.getAllServiceHolders(AbstractHk2InjectionManager.java:140)
    at org.glassfish.jersey.inject.hk2.ImmediateHk2InjectionManager.getAllServiceHolders(ImmediateHk2InjectionManager.java:30)
    at org.glassfish.jersey.internal.inject.Providers.getServiceHolders(Providers.java:307)
    at org.glassfish.jersey.internal.inject.Providers.getAllServiceHolders(Providers.java:279)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.lambda$createLazyExceptionMappers$1(ExceptionMapperFactory.java:177)
    at org.glassfish.jersey.internal.util.collection.Values$LazyValueImpl.get(Values.java:317)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.find(ExceptionMapperFactory.java:115)
    at org.glassfish.jersey.internal.ExceptionMapperFactory.findMapping(ExceptionMapperFactory.java:102)
    at org.glassfish.jersey.server.ServerRuntime$Responder.mapException(ServerRuntime.java:523)
    at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:403)
    at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:261)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
    at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:232)
    at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:680)
    at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:392)
    ... 37 more
Caused by: java.lang.IllegalArgumentException: interface org.glassfish.hk2.api.ProxyCtl is not visible from class loader
    at java.lang.reflect.Proxy$ProxyClassFactory.apply(Proxy.java:581)
    at java.lang.reflect.Proxy$ProxyClassFactory.apply(Proxy.java:557)
    at java.lang.reflect.WeakCache$Factory.get(WeakCache.java:230)
    at java.lang.reflect.WeakCache.get(WeakCache.java:127)
    at java.lang.reflect.Proxy.getProxyClass0(Proxy.java:419)
    at java.lang.reflect.Proxy.newProxyInstance(Proxy.java:719)
    at org.jvnet.hk2.internal.ProxyUtilities$3.run(ProxyUtilities.java:120)
    at java.security.AccessController.doPrivileged(Native Method)
    at org.jvnet.hk2.internal.ProxyUtilities.secureCreate(ProxyUtilities.java:115)
    at org.jvnet.hk2.internal.ProxyUtilities.generateProxy(ProxyUtilities.java:194)
    at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2074)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
    at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
    at org.glassfish.jersey.inject.hk2.ContextInjectionResolverImpl.resolve(ContextInjectionResolverImpl.java:103)
    at org.jvnet.hk2.internal.ClazzCreator.resolve(ClazzCreator.java:188)
    at org.jvnet.hk2.internal.ClazzCreator.resolveAllDependencies(ClazzCreator.java:205)
    ... 77 more
julie-sullivan commented 4 years ago

Fixed by b0e599ad3724ca7dddf702919fcc395a6c8b4e7e