Closed jtarraga closed 7 years ago
The variant metadata command line has to allow users to load, for a given dataset, an extended pedigree file with information about family relationships, gender (=sex), genetic data (disease and marker phenotypes),...
./build/bin/hpg-bigdata-local.sh variant metadata --i test.vcf.avro --load-pedigree test.ped --dataset my-test
In addition, the command line should allow users to save the pedigree information from a metadata file to a pedigree file in PED format.
./build/bin/hpg-bigdata-local.sh variant metadata --i test.vcf.avro --save-pedigree info.ped --dataset my-test
The variant metadata command line has to allow users to load, for a given dataset, an extended pedigree file with information about family relationships, gender (=sex), genetic data (disease and marker phenotypes),...
./build/bin/hpg-bigdata-local.sh variant metadata --i test.vcf.avro --load-pedigree test.ped --dataset my-testIn addition, the command line should allow users to save the pedigree information from a metadata file to a pedigree file in PED format.
./build/bin/hpg-bigdata-local.sh variant metadata --i test.vcf.avro --save-pedigree info.ped --dataset my-test