opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Apache License 2.0
17 stars 14 forks source link

Add the --create-cohort parameter to the variant metadata command line #105

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

In order to add new cohorts to a given dataset, the variant metadata command line should offer this functionality. The optional parameter --create-cohort will be added, and its expected value should following the format ::. E.g.:

./build/bin/hpg-bigdata-local.sh variant metadata --i test.vcf.avro --create-cohort control::HG00096,HG00097,HG00099