Annotate variants when converting VCF to Avro/Parquet

opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

Apache License 2.0

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Annotate variants when converting VCF to Avro/Parquet #130

Closed jtarraga closed 7 years ago

jtarraga commented 7 years ago

For efficiency purposes, the command line for convert VCF to Avro/Parquet should allow users to annotate variants and so to save annotated variants in Avro/Parquet format.