This framework should provide a parallel implementation for converting (VCF to Avro/Parquet) and annotating variants in order to speed up these processes. To achieve this parallelization, we will use the Parallel Task Runner object implemented in the OpenCB commons-lib.
The variant command line should add a new parameter (-t or --num-threads) to indicate the number of threads to use.
This framework should provide a parallel implementation for converting (VCF to Avro/Parquet) and annotating variants in order to speed up these processes. To achieve this parallelization, we will use the Parallel Task Runner object implemented in the OpenCB commons-lib.
The variant command line should add a new parameter (-t or --num-threads) to indicate the number of threads to use.