opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Apache License 2.0
17 stars 14 forks source link

Add new command 'alignment sort' #81

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

In order to speed up some computations (e.g. computing the coverage), the alignments within the file should be sorted. We need a new command (e.g. sort) to perform that:

./build/bin/hpg-bigdata-local.sh alignment sort -i -o