opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Apache License 2.0
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Remove duplicate code in Alignment/VariantCommandExecutor #84

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

Currently, Alignment and Variant CommandExecutor have duplicate code, i.e., several identical parts of code. These parts of identical code should be replaced with a single method. So the fix would be to extract the method and delegate to common behaviour.