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opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Apache License 2.0
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Support the --region-file parameter in the alignment query command #85

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

Currently, the alignment query command line handles regions from the parameter -r,--region. It should support the parameter --region-file to allow users to provide multiple regions from a file. Each file line contains a region following the format: "chromosome_name:start-end"