opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Apache License 2.0
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Create the 'variant view' command line #86

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

In order to offer to users a richer variant command line interface, we should provide a 'view' command to display the variants from avro/parquet files. The output will be in pretty JSON format and an useful parameter is '--head ' to display the first 'n' variants. E.g.:

./build/bin/hpg-bigdata-local.sh variant view -i --head 20