Add the --sam parameter to the alignment view command line

opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

Apache License 2.0

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Add the --sam parameter to the alignment view command line #90

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

Currently, the alignment view command line show the content of the Avro/Parquet file in pretty JSON format. It should be useful to show the output in SAM format.