Add the --schema parameter to the alignment and variant view command lines

opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

Apache License 2.0

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Add the --schema parameter to the alignment and variant view command lines #93

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

The --schema parameter will show the Avro schema used to store variants and alignments. The schema will be displayed in pretty JSON format. Schemas can help users to understand which information is being saved and how to process it. E.g.:

./build/bin/hpg-bigdata-local.sh variant view -i [--schema] ./build/bin/hpg-bigdata-local.sh alignment view -i [--schema]