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opencb / hpg-bigdata

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
Apache License 2.0
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Convert BAM to Parquet without going through Avro #97

Closed jtarraga closed 7 years ago

jtarraga commented 8 years ago

Currently, when converting a BAM file to Parquet, first, the BAM is converted to Avro and then, to Parquet (i.e.: BAM -> Avro -> Parquet). A more effective approach should be implemented to convert from BAM to Parquet without going through Avro.