opencb opencga issues - Githubissues

opencb / opencga

An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Please contact support@zettagenomics.com for bug report and feature requests.

Apache License 2.0

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issues

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TASK-7142 - OOME running calculate_pedigree_graph

#2532 pfurio opened 4 days ago
1
TASK-7207 - Fix Organization migration issue

#2531 pfurio closed 1 week ago
1
TASK-6445 - Implement OpenCGA Workflows with NextFlow

#2530 pfurio opened 1 week ago
1
TASK-7134 - Re-implement Aggregations Stats for all Catalog Browsers

#2529 jtarraga opened 2 weeks ago
1
TASK-7187 - admin/users/sync web service doesn't work

#2528 pfurio opened 2 weeks ago
1
TASK-4682 - Error in VariantExport VCF : Duplicate allele (pre-step to exomiser)

#2527 j-coll closed 18 hours ago
1
TASK-7175 - Port Patch 2.0.1 -> 2.4.0

#2526 juanfeSanahuja opened 2 weeks ago
1
TASK-7046 - Add a new field "type" to Notes data model

#2525 pfurio opened 3 weeks ago
0
TASK-7155: Upgrade MongoDB to v7.0

#2524 pfurio opened 4 weeks ago
0
TASK-7118 - When migrating from XetaBase 1.x to 2.x users can't specify the Organization name

#2523 pfurio closed 4 weeks ago
1
TASK-6722 - Variant Walker to enable user defined variant analysis

#2522 j-coll opened 1 month ago
1
TASK-5688 - Allow study administrators to synchronise groups from LDAP/Azure

#2521 pfurio opened 1 month ago
1
TASK-7004 - Variable set creation/update not possible with study admin permission

#2520 pfurio closed 3 weeks ago
1
TASK-7097 - Port Patch 3.3.0 -> 4.0.0 Xetabase 2.3.0 -> 3.0.0

#2519 juanfeSanahuja closed 1 month ago
0
TASK-7092 - Port Patch 2.12.8 -> 3.3.0 Xetabase 1.10.8 -> 2.3.0

#2518 juanfeSanahuja closed 1 month ago
2
TASK-6754 - Create cohort with more than 1000 samples lead to MongoDB restarts

#2517 pfurio closed 1 month ago
1
TASK-7038 - Port Patch 3.2.2 -> 3.3.0 - Xetabase 2.2.2 -> 2.3.0

#2516 juanfeSanahuja closed 1 month ago
2
TASK-6983 - NPE at DetectIllegalConcurrentFileLoadingsMigration

#2515 j-coll closed 1 month ago
1
TASK-6983 - NPE at DetectIllegalConcurrentFileLoadingsMigration

#2514 j-coll closed 1 month ago
1
TASK-6780 - Port Patch 3.2.1 -> 4.0.0 - Xetabase 2.2.1 -> 3.0.0

#2513 juanfeSanahuja closed 1 month ago
1
TASK-6981 - Should not use same Solr timeout for reading and for indexing

#2512 jtarraga opened 2 months ago
1
TASK-6998 - Fix cohort-sample reference migration

#2511 pfurio closed 1 month ago
1
TASK-6998 - Fix cohort-sample reference migration

#2510 pfurio closed 1 month ago
1
TASK-6992 - Error with token in the CLI

#2509 juanfeSanahuja closed 1 month ago
1
build(deps): bump org.apache.hadoop:hadoop-common from 2.10.0 to 3.4.0 in /opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-compat/opencga-storage-hadoop-compat-hbase2.4

#2508 dependabot[bot] opened 2 months ago
0
TASK-4073 - avoid NPE when body of POST WS is null

#2507 pfurio closed 1 month ago
1
TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC

#2506 juanfeSanahuja closed 2 months ago
1
TASK-6871 - The default passwordExpirationDate is set to 0 instead of 90 days

#2505 pfurio closed 2 months ago
1
TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC

#2504 juanfeSanahuja closed 2 months ago
1
TASK-6765 - Improve VCF Export performance from secondary sample index

#2503 j-coll opened 2 months ago
0
TASK-6835 - Cellbase dependency error in opencga build

#2502 juanfeSanahuja closed 2 months ago
0
TASK-6458 - Deployment: Xetabase kubernetes 1.29 compatibility

#2501 juanrizetta closed 1 month ago
0
TASK-6807 - Pull request approve workflow Fail

#2500 juanfeSanahuja closed 2 months ago
1
TASK-6708 - Port Patch 2.12.7 -> 3.2.1 (Xetabase 1.10.7 -> 2.2.1)

#2499 juanfeSanahuja closed 2 months ago
2
TASK-6789 - Variant query fails with large skip values

#2498 j-coll closed 2 months ago
0
TASK-6737 - Force parameter is not recognised in the variant delete operation

#2497 j-coll closed 2 months ago
1
TAKS-6756 - Error deleting files from archive table

#2496 j-coll closed 2 months ago
1
TASK-6219 - Automatic Variant Secondary Index

#2495 j-coll opened 3 months ago
1
TASK-6636 - Job Kill method in JavaScript client of OpenCGA sends the params as POST body data

#2494 juanfeSanahuja closed 3 months ago
0
TASK-6703 - Fix junit tests

#2493 j-coll closed 3 months ago
0
TASK-6492 - Clinical Case query failed with cvCt value loss_of_function

#2492 jtarraga closed 3 months ago
0
TASK-6515 - Port Patch 2.12.6.1 -> 3.2.1 (XB 1.10.6.1 -> 2.2.1)

#2491 juanfeSanahuja closed 3 months ago
1
TASK-6596 - Error loading long variants: DocValuesField "variantId" is too large, must be <=32766

#2490 j-coll closed 4 months ago
1
TASK-6626 - CLI file update sets empty attributes object

#2489 pfurio closed 3 months ago
1
TASK-6494 - Improve our current Password Policy for built-in authentication in OpenCGA

#2488 pfurio closed 3 months ago
1
TASK-5610 Create the CVDB endpoint analysis/clinical/cvdb/variant/stats and overwrite analysis/clinical/variant

#2487 jtarraga closed 4 months ago
1
Task 5318 Implement custom annotator to allow clients private files

#2486 jtarraga closed 4 months ago
1
TASK-6568 - Missing tagsAction in notes/update

#2485 pfurio closed 3 months ago
1
TASK-6558 - Issue indexing variants with length 0 (i.e. start > end) and CIEND

#2484 j-coll closed 3 months ago
1
TASK-6522 - NoSuchMethodError okhttp3 in opencga-enterprise

#2483 j-coll closed 4 months ago
1