Open Mohammedhusen opened 4 years ago
Hi Team,
Could you please update on this. We really appreciate your help.
Hi @Mohammedhusen , thanks for the report, I'll take a look.
Could you please confirm the opencga version by running opencga.sh --version
?
Version 1.4.1 Git version: master dad91554c874e14023d7038644d1257d8d5c04f4
Hi @Mohammedhusen,
Which params did you use to index the VCF files? Can you share the command line used for it? How many files and samples did you load in the study?
Hi j-coll,
Please find my comments below.
Which params did you use to index the VCF files?
./opencga.sh variant index --file filename.gz --transform -o Output -s studyname
Can you share the command line used for it?
./opencga.sh variant index --file filename.gz --load -o Output -s studyname
How many files and samples did you load in the study?
6K+
Does any of your files have no GT field for samples?
it is multisample VCF file containing 6K samples and it has GT field for all.
Hi Team,
Getting below error while running stats ,could you please help.