Open ali-kishk opened 4 years ago
Hi it may be that COBRA.jl needs to be updated to point to the new location of the models repo: https://github.com/opencobra/COBRA.models Alternatively, add that missing model to the new repo. Regards, Ronan
On Mon, 23 Mar 2020 at 12:43, ali-kishk notifications@github.com wrote:
I have only both the model.mat and KO script 'Macrophage_KO.m' in the test directory.
PALM(modelDir, "$(joinpath(dirname(pathof(COBRA)), "../test/Macrophage_KO.m"))", nMatlab=nWorkers, outputFile="modelCharacteristics.mat", varsCharact=varsCharact, cobraToolboxDir=installDir)
but I am getting this error:
Every worker will run 17 model(s). Load sharing is ideal.
-- Load distribution --
-
Number of models: 17
Number of workers: 1
True load (models/worker): 17.0
Realistic load (quotient): 17
Remaining load (remainder): 0
┌ Info: Directory with 17 models read successfully. └ @ COBRA ~/COBRA.jl/src/PALM.jl:247
The poolsize is equal to 1. PALM.jl is meant to be used in parallel, not serial or sequential.
Stacktrace: [1] error(::String) at ./error.jl:33 [2] PALM(::String, ::String; nMatlab::Int64, outputFile::String, varsCharact::Array{String,1}, cobraToolboxDir::String, printLevel::Int64, useCOBRA::Bool) at ~/COBRA.jl/src/PALM.jl:257
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I have only both the model.mat and KO script 'Macrophage_KO.m' in the test directory.
PALM(modelDir, "$(joinpath(dirname(pathof(COBRA)), "../test/Macrophage_KO.m"))", nMatlab=nWorkers, outputFile="modelCharacteristics.mat", varsCharact=varsCharact, cobraToolboxDir=installDir)
but I am getting this error:
-- Load distribution --
Number of models: 17
Number of workers: 1
True load (models/worker): 17.0
Realistic load (quotient): 17
Remaining load (remainder): 0
┌ Info: Directory with 17 models read successfully. └ @ COBRA ~/COBRA.jl/src/PALM.jl:247
The poolsize is equal to 1. PALM.jl is meant to be used in parallel, not serial or sequential.
Stacktrace: [1] error(::String) at ./error.jl:33 [2] PALM(::String, ::String; nMatlab::Int64, outputFile::String, varsCharact::Array{String,1}, cobraToolboxDir::String, printLevel::Int64, useCOBRA::Bool) at ~/COBRA.jl/src/PALM.jl:257