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opencobra / cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.
http://opencobra.github.io/cobrapy/
GNU General Public License v2.0
467 stars 218 forks source link

Update supported Python versions #1293

Closed cdiener closed 2 years ago

cdiener commented 2 years ago

Update Python versions consistent with https://endoflife.date/python .

codecov-commenter commented 2 years ago

Codecov Report

Base: 84.40% // Head: 84.19% // Decreases project coverage by -0.21% :warning:

Coverage data is based on head (c0e9771) compared to base (7473d13). Patch has no changes to coverable lines.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## devel #1293 +/- ## ========================================== - Coverage 84.40% 84.19% -0.22% ========================================== Files 66 66 Lines 5497 5499 +2 Branches 1265 1257 -8 ========================================== - Hits 4640 4630 -10 - Misses 551 558 +7 - Partials 306 311 +5 ``` | [Impacted Files](https://codecov.io/gh/opencobra/cobrapy/pull/1293?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra) | Coverage Δ | | |---|---|---| | [src/cobra/flux\_analysis/moma.py](https://codecov.io/gh/opencobra/cobrapy/pull/1293/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra#diff-c3JjL2NvYnJhL2ZsdXhfYW5hbHlzaXMvbW9tYS5weQ==) | `60.52% <0.00%> (-18.43%)` | :arrow_down: | | [src/cobra/flux\_analysis/fastcc.py](https://codecov.io/gh/opencobra/cobrapy/pull/1293/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra#diff-c3JjL2NvYnJhL2ZsdXhfYW5hbHlzaXMvZmFzdGNjLnB5) | `87.27% <0.00%> (-1.82%)` | :arrow_down: | | [src/cobra/util/solver.py](https://codecov.io/gh/opencobra/cobrapy/pull/1293/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra#diff-c3JjL2NvYnJhL3V0aWwvc29sdmVyLnB5) | `83.05% <0.00%> (-1.13%)` | :arrow_down: | | [src/cobra/core/model.py](https://codecov.io/gh/opencobra/cobrapy/pull/1293/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra#diff-c3JjL2NvYnJhL2NvcmUvbW9kZWwucHk=) | `86.97% <0.00%> (-0.41%)` | :arrow_down: | | [src/cobra/io/sbml.py](https://codecov.io/gh/opencobra/cobrapy/pull/1293/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra#diff-c3JjL2NvYnJhL2lvL3NibWwucHk=) | `80.02% <0.00%> (+0.02%)` | :arrow_up: | | [src/cobra/sampling/hr\_sampler.py](https://codecov.io/gh/opencobra/cobrapy/pull/1293/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra#diff-c3JjL2NvYnJhL3NhbXBsaW5nL2hyX3NhbXBsZXIucHk=) | `84.97% <0.00%> (+0.08%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=opencobra)

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cdiener commented 2 years ago

Waiting on the last release for swiglpk to get to PyPi which should fix Python 3.11.