opencobra / cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.
http://opencobra.github.io/cobrapy/
GNU General Public License v2.0
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Support CARVEME and GAPSEQ external IDs #1404

Closed cdiener closed 2 months ago

cdiener commented 2 months ago

Models generated with CARVEME and GAPSEQ would generate a lot of warnings when using any functions that use the external compartment heuristic because they were not covered by the positive list before. The heuristic would always be correct, and the compartment names are easily identifiable, so this now adds them here.