Open akaviaLab opened 5 years ago
rxn.mat is a small matrix distributed in src/reconstruction/rBioNet/rxn.mat and in cobratoolbox/test/verifiedTests/reconstruction/testRBioNet/ which seems to bias the functions of rBioNet. ping @laurentheirendt, @rmtfleming, since I believe you guys wrote rBioNet.
Hi, I think rxn.mat is a set of reactions. It is assumed that it is in the current folder or a folder in the current path. Perhaps the code could be edited to select a path to a rxn.mat. Regards, Ronan
On Mon, 10 Jun 2019 at 14:28, akaviaLab notifications@github.com wrote:
rxn.mat is a small matrix distributed in src/reconstruction/rBioNet/rxn.mat and in cobratoolbox/test/verifiedTests/reconstruction/testRBioNet/ which seems to bias the functions of rBioNet. ping @laurentheirendt https://github.com/laurentheirendt, @rmtfleming https://github.com/rmtfleming, since I believe you guys wrote rBioNet.
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https://github.com/opencobra/cobratoolbox/blob/c72a7bd511f79ebc1b6b1e0421544b22b4a9335d/src/reconstruction/rBioNet/neighborRxn2data.m#L44
This is unclear, since it loads up existing data, instead of using the model. Was this perhaps meant to be "rxns"?