simulating gut microbiome using recon 3d

opencobra / cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

https://opencobra.github.io/cobratoolbox

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simulating gut microbiome using recon 3d #1688

Open bab135 opened 3 years ago

bab135 commented 3 years ago

*Please include a short description of problem here how to get codes for creating a community model for probiotics. also how to simulate this in recon 3d using different diets I hereby confirm that I have:

[ ] Tried to solve the issue on my own
[ ] Retried to run my code with the latest version of The COBRA Toolbox
[ ] Checked that a similar issue has not already been opened

(Note: You may replace [ ] with [X] to check the box)

almut-heinken commented 3 years ago

Hi @bab135 have a look at the updated mgPipe tutorial (Microbiome Modeling Tooolbox). That should address what you are trying to do. best, Almut