rmtfleming
commented
2 years ago An alternative: https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/recon2FBAmodel
On Mon, 29 Nov 2021 at 13:16, helenaherand @.***> wrote:
I am trying to determine those reactions which cannot carry flux in the given simulation condition with findBlockedReaction(model)
model = readCbModel('Human-GEM.mat') findBlockedReaction(model)
but there seems to be something wrong with the SWITCH expression. Why is there an issue?
SWITCH expression must be a scalar or a character vector.
Error in solveCobraLP (line 206) switch solver
Error in fluxVariability (line 209) tempSolution = solveCobraLP(LPproblem, solverVarargin.LP{:});
Error in findBlockedReaction (line 28) [minMax(:, 1), minMax(:, 2)] = fluxVariability(model, 0);
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Mr. Ronan MT Fleming B.V.M.S. Dip. Math. Ph.D.
Associate Professor, School of Medicine, National University of Ireland, Galway. & Assistant Professor, Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University. https://www.universiteitleiden.nl/en/staffmembers/ronan-fleming & H2020 Project Coordinator, Systems Medicine of Mitochondrial Parkinson’s Disease, http://sysmedpd.eu
Peer-reviewed publications: https://goo.gl/FZPG23 Mobile: +353 852 109 806 Skype: ronan.fleming
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I am trying to determine those reactions which cannot carry flux in the given simulation condition with findBlockedReaction(model)
model = readCbModel('Human-GEM.mat') findBlockedReaction(model)
but there seems to be something wrong with the SWITCH expression. Why is there an issue?
SWITCH expression must be a scalar or a character vector.
Error in solveCobraLP (line 206) switch solver
Error in fluxVariability (line 209) tempSolution = solveCobraLP(LPproblem, solverVarargin.LP{:});
Error in findBlockedReaction (line 28) [minMax(:, 1), minMax(:, 2)] = fluxVariability(model, 0);