rmtfleming
commented
2 years ago expressionRxns(j) = NaN when there is no expression data for the corresponding gene.
On Wed, 23 Feb 2022 at 11:33, anilk991 @.***> wrote:
The [expressionRxns, parsedGPR, gene_used] = mapExpressionToReactions(model, expData); is giving expressionRxns variable as entirely NaN values. But parsedGPR and gene_used return cell array. The genes in expData are in entrez format without version, on the other hand genes in model.genes are in entrez format with version.
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Mr. Ronan MT Fleming B.V.M.S. Dip. Math. Ph.D.
Associate Professor, School of Medicine, National University of Ireland, Galway. & Assistant Professor, Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research, Faculty of Science, Leiden University. https://www.universiteitleiden.nl/en/staffmembers/ronan-fleming & H2020 Project Coordinator, Systems Medicine of Mitochondrial Parkinson’s Disease, http://sysmedpd.eu
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anilk991
The
[expressionRxns, parsedGPR, gene_used] = mapExpressionToReactions(model, expData);is giving expressionRxns variable as entirely NaN values. But parsedGPR and gene_used return cell array. The genes in expData are in entrez format without version, on the other hand genes in model.genes are in entrez format with version.I hereby confirm that I have:
(Note: You may replace [ ] with [X] to check the box)