Warning in prepareFastgapfill

[pengqiannan]

*Warning in the function 'prepareFastGapFill', it throws out the following warning: Warning: Reaction rxn00001has more than one replicate Error in checkDuplicateRxn (line 95) Error in mergeTwoModels (line 158) Error in generateSUXComp (line 82) Error in prepareFastGapFill (line 86)

I also tried to run 'runGapFill_example.m' with the example model, but the same waring was also throws out.

I hereby confirm that I have:

• [ ] Tried to solve the issue on my own
• [ ] Retried to run my code with the latest version of The COBRA Toolbox
• [ ] Checked that a similar issue has not already been opened

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[rmtfleming]

model.rxns should not have any duplicates. It seems like a problem with your model. How many model.rxn{i} are rxn00001 ?

On Sun, 30 Oct 2022 at 08:39, nystati @.***> wrote:

*Warning in the function 'prepareFastGapFill', it throws out the following warning: Warning: Reaction rxn00001has more than one replicate Error in checkDuplicateRxn (line 95) Error in mergeTwoModels (line 158) Error in generateSUXComp (line 82) Error in prepareFastGapFill (line 86)

I also tried to run 'runGapFill_example.m' with the example model, but the same waring was also throws out.

I hereby confirm that I have:

• Tried to solve the issue on my own
• Retried to run my code with the latest version of The COBRA Toolbox
• Checked that a similar issue has not already been opened

(Note: You may replace [ ] with [X] to check the box)

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[pengqiannan]

Thanks for your response, But in my model, there were no duplicate rxns, while these rxns, such as rxn00001, were in my database (myreaction.lst), but they are not duplicate reactions in the database. After run 'prepareFastgapfill', I can also obtain 'consistModel', 'consistMatricesSUX' and 'BlockedRxns'. But there were no exchange and transport reactions in 'consistMatricesSUX'.