Open pengqiannan opened 1 year ago
model.rxns should not have any duplicates. It seems like a problem with your model. How many model.rxn{i} are rxn00001 ?
On Sun, 30 Oct 2022 at 08:39, nystati @.***> wrote:
*Warning in the function 'prepareFastGapFill', it throws out the following warning: Warning: Reaction rxn00001has more than one replicate Error in checkDuplicateRxn (line 95) Error in mergeTwoModels (line 158) Error in generateSUXComp (line 82) Error in prepareFastGapFill (line 86)
I also tried to run 'runGapFill_example.m' with the example model, but the same waring was also throws out.
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Thanks for your response, But in my model, there were no duplicate rxns, while these rxns, such as rxn00001, were in my database (myreaction.lst), but they are not duplicate reactions in the database. After run 'prepareFastgapfill', I can also obtain 'consistModel', 'consistMatricesSUX' and 'BlockedRxns'. But there were no exchange and transport reactions in 'consistMatricesSUX'.
*Warning in the function 'prepareFastGapFill', it throws out the following warning: Warning: Reaction rxn00001has more than one replicate Error in checkDuplicateRxn (line 95) Error in mergeTwoModels (line 158) Error in generateSUXComp (line 82) Error in prepareFastGapFill (line 86)
I also tried to run 'runGapFill_example.m' with the example model, but the same waring was also throws out.
I hereby confirm that I have:
(Note: You may replace [ ] with [X] to check the box)