Fix duplicate rxns

[ChristianLieven]

• [x] fix #560, #515

• [x] description of feature/fix

• [x] tests added/passed

• [x] add an entry to the next release

• Refactor test that identifies duplicate reactions to take into metabolites, reaction directionality and compartments into account.

• Add additional tests that identify reactions having identical annotations and identical genes.

• Refactor test that identifies duplicate metabolites to use for inchi strings in addition to inchikeys.

[codecov[bot]]

Codecov Report

Merging #591 into develop will decrease coverage by 0.01%. The diff coverage is 87.09%.

@@             Coverage Diff             @@
##           develop     #591      +/-   ##
===========================================
- Coverage    79.95%   79.93%   -0.02%     
===========================================
  Files           57       57              
  Lines         2929     2981      +52     
  Branches       388      403      +15     
===========================================
+ Hits          2342     2383      +41     
- Misses         521      529       +8     
- Partials        66       69       +3

Impacted Files	Coverage Δ
memote/support/basic.py	92.42% <86.53%> (-4.25%)	:arrow_down:
memote/suite/tests/test_basic.py	98.52% <90%> (-1.48%)	:arrow_down:
memote/suite/tests/test_thermodynamics.py	88.88% <0%> (-11.12%)	:arrow_down:

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[codecov[bot]]

Codecov Report

Merging #591 into develop will increase coverage by 0.18%. The diff coverage is 88.29%.

@@             Coverage Diff             @@
##           develop     #591      +/-   ##
===========================================
+ Coverage     80.1%   80.29%   +0.18%     
===========================================
  Files           57       57              
  Lines         2931     3014      +83     
  Branches       390      414      +24     
===========================================
+ Hits          2348     2420      +72     
- Misses         518      524       +6     
- Partials        65       70       +5

Impacted Files	Coverage Δ
memote/suite/tests/test_basic.py	100% <100%> (ø)	:arrow_up:
memote/support/basic.py	91.19% <86.25%> (-5.48%)	:arrow_down:

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Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update a88e24c...0685248. Read the comment docs.