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opencobra / memote

memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
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Total statistics graph unreadable (score per category, rotate axes labels) #627

Closed matthiaskoenig closed 5 years ago

matthiaskoenig commented 5 years ago

The overview statistics plot (score per category) is unreadable (see screenshot). Axes labels must be rotated by 45 or 90 degrees for readability.

sbo_example

Also it would be great to put the overall statistics back at the top of the report. Most of the time I just want to see the big number (and if it improved). This is the most important information and should be at the top at the report (like in earlier versions).

ChristianLieven commented 5 years ago

The plots ought to be fixed with #644.

We made a conscious decision to move the score and overviews to the bottom of the report in an effort to stop users from reducing models to just their score. We're hoping that scrolling through the report nudges users towards appreciating the nuances of model/reconstruction QC. Since the displays are still there It is merely a minor inconvenience, I believe, and this is outweighed by having consensus with co-authors who were adamant about removing the prominent display of the final score altogether.

ChristianLieven commented 5 years ago

Please reopen this issue if #644 hasn't addressed your concerns.

matthiaskoenig commented 5 years ago

@ChristianLieven Thanks for the fix and explanation. Issue is solved.