opencobra / memote

memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
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Number of medium components is normalized incorrectly #642

Open Midnighter opened 5 years ago

Midnighter commented 5 years ago

In the test test_find_medium_metabolites, the number of medium components seems to be identified 'incorrectly'. I use 'incorrectly' loosely since any exchange reaction that allows uptake will be considered part of the medium and that is not incorrect. The result, however, is that the normalized metric is always 1 which is not useful.