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opencobra / memote

memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
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Error running memote online #706

Closed stelmo closed 1 year ago

stelmo commented 3 years ago

Hi,

I am trying to incorporate automatic memote tests in a metabolic model I am building. I was trying out your instructions in the documents, but I ran into an issue. I am able to successfully create a local repo of a model using memote new but when I run memote online I get the following error message:

... Encrypting GitHub token for repo 'stelmo/ltmodel'. Storing GitHub token in '.travis.yml'. Add, commit and push changes to '.travis.yml' to GitHub. cmdline: git push --set-upstream origin master stderr: 'Host key verification failed. fatal: Could not read from remote repository.

Please make sure you have the correct access rights and the repository exists.'

I am not sure how to resolve this.

After this error halted the process I tried adding the resultant (presumably incomplete repo?) files using Github Desktop. I tried adding it as a local repo but I get the error "Authentication failed" when I try this. I can see the repo on my Github account online, but it seem "uninitialized"...

Does anybody know why this is happening and how I can fix it?

famosab commented 3 years ago

I have a similar issue where I give my correct github username while creating the repository via memote new but as soon as I try to run memote online it always says that my Authentication fails.

Midnighter commented 3 years ago

There was a switch in mid November in the GitHub API and password authentication, as we implemented it, is no longer possible. There should be a new web authentication flow. Is that something either of you is able to implement and maybe contribute to memote? Otherwise maybe @phantomas1234 has someone who can work on this.