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opencobra / memote

memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
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Non-Growth Associated Maintenance Reaction test_ngam_presence #731

Open helenaherand opened 2 years ago

helenaherand commented 2 years ago

the test_ngam_presence is not passed in my model and I do not understand why that is the case.

"reversible" is set to false, the reaction is in the cytosol (the compartment with the most metabolites) and "atpm" is presence in "name" and in "".

Midnighter commented 2 years ago

Don't know if that's a typo here or in your model, seems your p and t are flipped in <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/aptm"/>.

helenaherand commented 2 years ago

Thanks @Midnighter. The typo is not in the model

Midnighter commented 2 years ago

@helenaherand would it be possible for you to share the model with me, please? By email is fine if you don't want to share it here.