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opencobra / memote

memote – the genome-scale metabolic model test suite
https://memote.readthedocs.io/
Apache License 2.0
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WorkerLostError: Worker exited prematurely: exitcode 155 Job: 210. #734

Open maxinyi-vi opened 2 years ago

maxinyi-vi commented 2 years ago

I got this error when trying to run the test using the online platform. The error message is "WorkerLostError: Worker exited prematurely: exitcode 155 Job: 210." The model is attached below. Thank you! Lactobacillus_reuteri_MM23.txt

Midnighter commented 2 years ago

Did you change the file extension to .txt so you can easily upload it here or is that also how you uploaded it to the service? In case you haven't, can you change it to .xml, please, and try again?

maxinyi-vi commented 2 years ago

I did change the extension to upload it here - sorry for that! I uploaded the original file to google drive and I wonder if you can get it from the link below, thank you! https://drive.google.com/file/d/1SJ4yZWFGpXWKPgpLNoa7uqjNcCv1xl6X/view?usp=sharing

maxinyi-vi commented 2 years ago

Also there seems to be some issue with the results of some other models I uploaded - I got this page when I clicked "view report", and some models I tried to upload later remains in queue for several hours. I wonder if these are also due to the issue? Thank you for looking into the matter! image

Midnighter commented 2 years ago

Those are a lot of questions 🙂 I will focus on your original one. Please note that reports are currently deleted after a week so maybe that's why they disappear for you? Also, there is currently only a single process running the test suite. So the queue may pile up easily.

maxinyi-vi commented 2 years ago

I see! Thank you so much!