core dumped during test_consistency.py

Problem description

I have a model which I annotated using MetaNetX, and then I wanted to generate a MEMOTE report, to compare it to my pre-MetaNetX model.

However, I get the error: ../test_consistency.py FFAborted (core dumped)

My pre-MetaNetX files do not have this problem.

Code Sample

I have run MEMOTE both in python:

# Load model
model = read_sbml_model('model.xml')

# Run memote
result=memote.test_model(model, results=True)

# Print report to disk
report = memote.snapshot_report(result[1], config=None, html=True)
with open("model.html", "w") as handle:
    handle.write(report)

and command line:

memote report snapshot --filename model.html model.xml

and online

We're sorry, we encountered a network issue while trying to upload your model. Please check your internet connection, and try again in a short while.

Running with skip=["test_stoichiometric_consistency"] in python and --skip test_consistency in command line fixes the issue but I want these values.

How can I achieve this? Is it due to the filesize limitations or something MetaNetX is doing? If so, do you have another recommendation to fill out the annotation and metadata?

Context

``` Jinja2 3.0.0 black ; extra == 'development' not installed click 7.0 click-configfile 0.2.3 click-log 0.3.0 cobra 0.21.0 cookiecutter 1.7.3 depinfo 1.7.0 future 0.18.2 gitpython 3.1.18 goodtables 2.5.4 importlib-resources 5.1.0 isort ; extra == 'development' not installed memote 0.13.0 numpydoc 1.1.0 pandas 1.1.3 pip 20.0.2 pylru 1.2.0 pytest 4.6.11 requests 2.23.0 ruamel.yaml 0.16.0 setuptools 46.4.0.post20200518 six 1.14.0 sqlalchemy 1.4.19 sympy 1.7.1 tox ; extra == 'development' not installed travis-encrypt 1.1.2 wheel 0.34.2 ```

opencobra / memote